We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr1h4
ModelNR1H4_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
A
Motif rank
1
ConsensusRGGKCAbh
Best auROC (human)
Best auROC (mouse)0.849
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)15
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
MGIMGI:1352464
EntrezGeneGeneID:20186
(SSTAR profile)
UniProt IDNR1H4_MOUSE
UniProt ACQ60641
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.344975
0.0005 6.2697
0.0001 7.555014999999999
GTEx tissue expression atlas Nr1h4 expression
Motifs in JASPAR
PCM
ACGT
01274.018.0194.014.0
021.01.0494.04.0
036.011.0480.03.0
0419.047.074.0360.0
053.0486.010.01.0
06465.028.05.02.0
0748.098.0231.0123.0
0876.0109.071.0244.0
PWM
ACGT
010.778-1.8680.435-2.096
02-3.903-3.9031.365-3.126
03-2.819-2.3111.336-3.325
04-1.818-0.958-0.5161.05
05-3.3251.349-2.394-3.903
061.305-1.454-2.961-3.573
07-0.938-0.240.608-0.016
08-0.49-0.135-0.5560.663