We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR1I2
(GeneCards)
ModelNR1I2_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
1
ConsensusdAGKTCAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words45
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
HGNCHGNC:7968
EntrezGeneGeneID:8856
(SSTAR profile)
UniProt IDNR1I2_HUMAN
UniProt ACO75469
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.59147
0.0005 6.36738
0.0001 7.737765
GTEx tissue expression atlas NR1I2 expression
ReMap ChIP-seq dataset list NR1I2 datasets
Motifs in JASPAR
PCM
ACGT
0121.3982.96614.9365.932
0234.2160.011.0170.0
030.00.045.2330.0
044.7670.08.79231.674
050.00.9530.044.28
060.042.1613.0720.0
0744.280.00.9530.0
084.55515.25411.22914.195
PWM
ACGT
010.6-1.1410.259-0.577
021.054-2.555-0.024-2.555
03-2.555-2.5551.326-2.555
04-0.762-2.555-0.230.979
05-2.555-1.861-2.5551.305
06-2.5551.257-1.114-2.555
071.305-2.555-1.861-2.555
08-0.80.279-0.0070.211