Transcription factor | Nr1i2 | ||||||||
Model | NR1I2_MOUSE.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 19 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | ddRRSTYARnnRAGKTCAb | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 29 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | Vitamin D receptor (NR1I) {2.1.2.4} | ||||||||
MGI | MGI:1337040 | ||||||||
EntrezGene | GeneID:18171 (SSTAR profile) | ||||||||
UniProt ID | NR1I2_MOUSE | ||||||||
UniProt AC | O54915 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr1i2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 9.38 | 3.648 | 5.628 | 10.527 |
02 | 8.755 | 1.876 | 11.673 | 6.879 |
03 | 12.611 | 3.961 | 11.569 | 1.042 |
04 | 7.713 | 0.0 | 19.386 | 2.085 |
05 | 1.98 | 5.941 | 16.363 | 4.899 |
06 | 0.0 | 0.938 | 1.876 | 26.369 |
07 | 0.0 | 17.718 | 1.876 | 9.589 |
08 | 20.637 | 8.546 | 0.0 | 0.0 |
09 | 17.51 | 2.814 | 4.794 | 4.065 |
10 | 8.755 | 6.045 | 8.546 | 5.837 |
11 | 9.693 | 6.879 | 6.775 | 5.837 |
12 | 17.406 | 1.98 | 9.797 | 0.0 |
13 | 27.099 | 0.0 | 2.085 | 0.0 |
14 | 0.0 | 0.0 | 29.183 | 0.0 |
15 | 0.0 | 2.085 | 8.859 | 18.239 |
16 | 2.814 | 1.876 | 1.042 | 23.451 |
17 | 0.0 | 22.2 | 3.961 | 3.023 |
18 | 26.265 | 0.938 | 1.98 | 0.0 |
19 | 3.804 | 6.618 | 10.37 | 8.39 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.228 | -0.595 | -0.229 | 0.334 |
02 | 0.165 | -1.096 | 0.43 | -0.053 |
03 | 0.503 | -0.527 | 0.422 | -1.462 |
04 | 0.05 | -2.267 | 0.91 | -1.022 |
05 | -1.059 | -0.182 | 0.749 | -0.349 |
06 | -2.267 | -1.519 | -1.096 | 1.207 |
07 | -2.267 | 0.824 | -1.096 | 0.248 |
08 | 0.97 | 0.143 | -2.267 | -2.267 |
09 | 0.813 | -0.8 | -0.367 | -0.506 |
10 | 0.165 | -0.167 | 0.143 | -0.198 |
11 | 0.258 | -0.053 | -0.066 | -0.198 |
12 | 0.807 | -1.059 | 0.268 | -2.267 |
13 | 1.233 | -2.267 | -1.022 | -2.267 |
14 | -2.267 | -2.267 | 1.305 | -2.267 |
15 | -2.267 | -1.022 | 0.176 | 0.852 |
16 | -0.8 | -1.096 | -1.462 | 1.094 |
17 | -2.267 | 1.041 | -0.527 | -0.744 |
18 | 1.203 | -1.519 | -1.059 | -2.267 |
19 | -0.56 | -0.087 | 0.32 | 0.126 |