Model info
| Transcription factor | Nr1i2 | ||||||||
| Model | NR1I2_MOUSE.H11MO.1.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dAGKTCAb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 45 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Vitamin D receptor (NR1I) {2.1.2.4} | ||||||||
| MGI | MGI:1337040 | ||||||||
| EntrezGene | GeneID:18171 (SSTAR profile) | ||||||||
| UniProt ID | NR1I2_MOUSE | ||||||||
| UniProt AC | O54915 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr1i2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 21.398 | 2.966 | 14.936 | 5.932 |
| 02 | 34.216 | 0.0 | 11.017 | 0.0 |
| 03 | 0.0 | 0.0 | 45.233 | 0.0 |
| 04 | 4.767 | 0.0 | 8.792 | 31.674 |
| 05 | 0.0 | 0.953 | 0.0 | 44.28 |
| 06 | 0.0 | 42.161 | 3.072 | 0.0 |
| 07 | 44.28 | 0.0 | 0.953 | 0.0 |
| 08 | 4.555 | 15.254 | 11.229 | 14.195 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.6 | -1.141 | 0.259 | -0.577 |
| 02 | 1.054 | -2.555 | -0.024 | -2.555 |
| 03 | -2.555 | -2.555 | 1.326 | -2.555 |
| 04 | -0.762 | -2.555 | -0.23 | 0.979 |
| 05 | -2.555 | -1.861 | -2.555 | 1.305 |
| 06 | -2.555 | 1.257 | -1.114 | -2.555 |
| 07 | 1.305 | -2.555 | -1.861 | -2.555 |
| 08 | -0.8 | 0.279 | -0.007 | 0.211 |