We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr1i3
ModelNR1I3_MOUSE.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
1
ConsensusRAGTTCAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words33
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
MGIMGI:1346307
EntrezGeneGeneID:12355
(SSTAR profile)
UniProt IDNR1I3_MOUSE
UniProt ACO35627
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.506460000000001
0.0005 6.523915000000001
0.0001 7.526625
GTEx tissue expression atlas Nr1i3 expression
Motifs in JASPAR
PCM
ACGT
0116.5780.96911.4114.198
0224.0060.09.150.0
030.00.033.1560.0
040.00.012.91820.238
050.00.00.033.156
060.030.0342.0451.076
0733.1560.00.00.0
081.9389.79610.65710.765
PWM
ACGT
010.644-1.6030.293-0.591
020.999-2.3480.09-2.348
03-2.348-2.3481.312-2.348
04-2.348-2.3480.4090.835
05-2.348-2.348-2.3481.312
06-2.3481.216-1.144-1.547
071.312-2.348-2.348-2.348
08-1.1810.1520.230.239