Model info
| Transcription factor | Nr1i3 | ||||||||
| Model | NR1I3_MOUSE.H11MO.1.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RAGTTCAb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 33 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Vitamin D receptor (NR1I) {2.1.2.4} | ||||||||
| MGI | MGI:1346307 | ||||||||
| EntrezGene | GeneID:12355 (SSTAR profile) | ||||||||
| UniProt ID | NR1I3_MOUSE | ||||||||
| UniProt AC | O35627 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr1i3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 16.578 | 0.969 | 11.411 | 4.198 |
| 02 | 24.006 | 0.0 | 9.15 | 0.0 |
| 03 | 0.0 | 0.0 | 33.156 | 0.0 |
| 04 | 0.0 | 0.0 | 12.918 | 20.238 |
| 05 | 0.0 | 0.0 | 0.0 | 33.156 |
| 06 | 0.0 | 30.034 | 2.045 | 1.076 |
| 07 | 33.156 | 0.0 | 0.0 | 0.0 |
| 08 | 1.938 | 9.796 | 10.657 | 10.765 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.644 | -1.603 | 0.293 | -0.591 |
| 02 | 0.999 | -2.348 | 0.09 | -2.348 |
| 03 | -2.348 | -2.348 | 1.312 | -2.348 |
| 04 | -2.348 | -2.348 | 0.409 | 0.835 |
| 05 | -2.348 | -2.348 | -2.348 | 1.312 |
| 06 | -2.348 | 1.216 | -1.144 | -1.547 |
| 07 | 1.312 | -2.348 | -2.348 | -2.348 |
| 08 | -1.181 | 0.152 | 0.23 | 0.239 |