We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR2C2
(GeneCards)
ModelNR2C2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusdbnRbTYMMGGGKYRv
Best auROC (human)0.885
Best auROC (mouse)
Peak sets in benchmark (human)35
Peak sets in benchmark (mouse)
Aligned words556
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyTesticular receptors (NR2C) {2.1.3.4}
HGNCHGNC:7972
EntrezGeneGeneID:7182
(SSTAR profile)
UniProt IDNR2C2_HUMAN
UniProt ACP49116
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.2633600000000005
0.0005 9.060860000000002
0.0001 12.750810000000001
GTEx tissue expression atlas NR2C2 expression
ReMap ChIP-seq dataset list NR2C2 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0120.037.0116.020.012.021.025.07.021.09.038.018.021.040.041.048.0
0223.09.035.07.031.045.08.023.073.048.063.036.012.049.07.025.0
0323.07.0107.02.071.019.049.012.014.02.094.03.035.09.041.06.0
043.097.024.019.010.017.04.06.07.072.0176.036.01.015.05.02.0
050.00.02.019.013.04.04.0180.03.05.010.0191.02.00.02.059.0
060.06.00.012.00.01.00.08.01.010.01.06.02.0137.023.0287.0
072.01.00.00.0129.013.011.01.018.06.00.00.028.0281.03.01.0
0899.04.073.01.06.0282.012.01.05.01.08.00.02.00.00.00.0
0975.00.036.01.031.00.0256.00.058.00.034.01.02.00.00.00.0
102.01.0156.07.00.00.00.00.07.06.0312.01.00.00.02.00.0
110.00.09.00.01.00.05.01.018.011.0371.070.00.00.02.06.0
122.02.06.09.01.00.06.04.07.010.099.0271.01.09.017.050.0
131.04.05.01.01.016.01.03.04.078.024.022.04.0262.028.040.0
145.02.01.02.0236.021.099.04.034.017.07.00.028.021.012.05.0
1569.074.0120.040.07.013.026.015.011.041.054.013.06.01.01.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.4270.1791.315-0.427-0.926-0.38-0.208-1.443-0.38-1.2030.205-0.531-0.380.2560.2810.437
02-0.29-1.2030.124-1.4430.0040.373-1.316-0.290.8530.4370.7070.152-0.9260.457-1.443-0.208
03-0.29-1.4431.234-2.5720.826-0.4780.457-0.926-0.776-2.5721.105-2.2220.124-1.2030.281-1.588
04-2.2221.136-0.248-0.478-1.102-0.587-1.964-1.588-1.4430.841.730.152-3.115-0.709-1.758-2.572
05-4.39-4.39-2.572-0.478-0.848-1.964-1.9641.753-2.222-1.758-1.1021.812-2.572-4.39-2.5720.642
06-4.39-1.588-4.39-0.926-4.39-3.115-4.39-1.316-3.115-1.102-3.115-1.588-2.5721.48-0.292.218
07-2.572-3.115-4.39-4.391.42-0.848-1.01-3.115-0.531-1.588-4.39-4.39-0.0962.197-2.222-3.115
081.157-1.9640.853-3.115-1.5882.201-0.926-3.115-1.758-3.115-1.316-4.39-2.572-4.39-4.39-4.39
090.88-4.390.152-3.1150.004-4.392.104-4.390.625-4.390.095-3.115-2.572-4.39-4.39-4.39
10-2.572-3.1151.61-1.443-4.39-4.39-4.39-4.39-1.443-1.5882.302-3.115-4.39-4.39-2.572-4.39
11-4.39-4.39-1.203-4.39-3.115-4.39-1.758-3.115-0.531-1.012.4750.812-4.39-4.39-2.572-1.588
12-2.572-2.572-1.588-1.203-3.115-4.39-1.588-1.964-1.443-1.1021.1572.161-3.115-1.203-0.5870.477
13-3.115-1.964-1.758-3.115-3.115-0.646-3.115-2.222-1.9640.919-0.248-0.334-1.9642.127-0.0960.256
14-1.758-2.572-3.115-2.5722.023-0.381.157-1.9640.095-0.587-1.443-4.39-0.096-0.38-0.926-1.758
150.7970.8671.3480.256-1.443-0.848-0.17-0.709-1.010.2810.554-0.848-1.588-3.115-3.115-2.222