We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR2C2
(GeneCards)
ModelNR2C2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusRbTYMSGGGKCR
Best auROC (human)0.844
Best auROC (mouse)
Peak sets in benchmark (human)35
Peak sets in benchmark (mouse)
Aligned words502
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyTesticular receptors (NR2C) {2.1.3.4}
HGNCHGNC:7972
EntrezGeneGeneID:7182
(SSTAR profile)
UniProt IDNR2C2_HUMAN
UniProt ACP49116
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.230815
0.0005 5.123915
0.0001 6.9409350000000005
GTEx tissue expression atlas NR2C2 expression
ReMap ChIP-seq dataset list NR2C2 datasets
Motifs in JASPAR
MA0504.1 (NR2C2; Homo sapiens)
PCM
ACGT
01104.056.0313.027.0
0221.0160.0227.092.0
0315.014.046.0425.0
044.0202.027.0267.0
05187.0294.014.05.0
06118.0233.0146.03.0
07179.00.0319.02.0
088.03.0478.011.0
098.06.0425.061.0
104.015.0114.0367.0
1110.0401.059.030.0
12338.021.0131.010.0
PWM
ACGT
01-0.181-0.7880.91-1.489
02-1.7250.2440.591-0.302
03-2.034-2.096-0.9791.215
04-3.1260.475-1.4890.752
050.3990.848-2.096-2.961
06-0.0570.6170.154-3.325
070.355-4.40.929-3.573
08-2.584-3.3251.332-2.311
09-2.584-2.8191.215-0.705
10-3.126-2.034-0.0911.069
11-2.3941.157-0.737-1.389
120.987-1.7250.046-2.394