We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR2E1
(GeneCards)
ModelNR2E1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusMARKCAAdAAGTCAWbh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words70
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyTailless-like receptors (NR2E) {2.1.3.3}
HGNCHGNC:7973
EntrezGeneGeneID:7101
(SSTAR profile)
UniProt IDNR2E1_HUMAN
UniProt ACQ9Y466
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.235609999999999
0.0005 5.34126
0.0001 7.68186
GTEx tissue expression atlas NR2E1 expression
ReMap ChIP-seq dataset list NR2E1 datasets
Motifs in JASPAR
PCM
ACGT
0143.3528.2467.342.962
0249.0953.515.6983.598
038.7941.32146.7295.057
043.7583.7585.94748.437
050.7354.4282.2774.466
0653.613.0073.0072.277
0749.3223.7363.6485.195
0825.1595.8369.57321.334
0961.9010.00.00.0
1058.1653.0070.730.0
110.00.061.9010.0
122.2772.1890.057.435
130.058.1652.2771.459
1460.1930.5690.5690.569
1536.4888.4126.31210.689
1610.2811.73913.37526.507
1712.73914.119.9125.141
PWM
ACGT
010.989-0.576-0.679-1.419
021.111-1.291-0.897-1.271
03-0.519-1.9481.062-0.997
04-1.237-1.237-0.8611.098
05-2.2381.212-1.607-1.1
061.197-1.408-1.408-1.607
071.115-1.242-1.261-0.975
080.462-0.877-0.4430.304
091.338-2.773-2.773-2.773
101.277-1.408-2.238-2.773
11-2.773-2.7731.338-2.773
12-1.607-1.634-2.7731.265
13-2.7731.277-1.607-1.891
141.311-2.333-2.333-2.333
150.821-0.558-0.81-0.342
16-0.378-0.257-0.1360.512
17-0.181-0.086-0.4110.461