We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr4a2
ModelNR4A2_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
C
Motif rank
0
ConsensusRAAGGTCAv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words33
TF familyNGFI-B-related receptors (NR4) {2.1.4}
TF subfamilyNURR1 (NR4A2) {2.1.4.0.2}
MGIMGI:1352456
EntrezGeneGeneID:18227
(SSTAR profile)
UniProt IDNR4A2_MOUSE
UniProt ACQ06219
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.3668499999999995
0.0005 6.18478
0.0001 7.649964999999999
GTEx tissue expression atlas Nr4a2 expression
Motifs in JASPAR
MA0160.1 (NR4A2; Mus musculus/Rattus norvegicus/Homo sapiens)
MA1147.1 (NR4A2::RXRA; Homo sapiens)
PCM
ACGT
0121.842.0537.4421.256
0228.3240.02.5131.754
0331.3350.01.2560.0
040.00.030.7371.854
051.2560.030.3390.996
060.7975.0020.026.792
070.029.6420.02.949
0832.5910.00.00.0
096.0114.3110.0812.191
PWM
ACGT
010.924-1.126-0.081-1.444
021.175-2.337-0.98-1.234
031.273-2.337-1.444-2.337
04-2.337-2.3371.254-1.197
05-1.444-2.3371.241-1.575
06-1.688-0.429-2.3371.121
07-2.3371.219-2.337-0.859
081.311-2.337-2.337-2.337
09-0.2710.5210.194-1.08