We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR5A2
(GeneCards)
ModelNR5A2_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length16
Quality
B
Motif rank
0
ConsensusndbYCAAGGYCRnnnn
Best auROC (human)0.526
Best auROC (mouse)0.957
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)8
Aligned words501
TF familyFTZ-F1-related receptors (NR5) {2.1.5}
TF subfamilyLRH-1 (NR5A2) {2.1.5.0.2}
HGNCHGNC:7984
EntrezGeneGeneID:2494
(SSTAR profile)
UniProt IDNR5A2_HUMAN
UniProt ACO00482
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.83841
0.0005 11.16791
0.0001 15.77816
GTEx tissue expression atlas NR5A2 expression
ReMap ChIP-seq dataset list NR5A2 datasets
Motifs in JASPAR
MA0505.1 (Nr5a2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0144.52718.993103.5621.20428.716.6112.85740.88519.21125.99532.8625.99417.74611.92557.11241.81
0219.95618.79537.28934.1549.02222.5750.92231.00516.77943.18353.53582.8919.50639.06429.34551.979
038.57220.4294.19222.0696.95159.5280.057.1391.93556.48.23554.5212.41336.4354.21146.97
040.028.9580.9130.00.899164.5515.3112.030.013.6912.9470.01.007258.9419.8540.897
051.9070.00.00.0461.1711.8592.2020.90728.1340.00.8910.02.030.00.00.897
06473.3910.85915.8153.1771.8590.00.00.03.0940.00.00.01.8050.00.00.0
074.720.0475.4290.00.00.00.8590.00.00.014.9220.8930.00.02.3280.849
080.00.04.720.00.00.00.00.01.7730.0491.7650.00.00.01.7420.0
090.8990.8730.00.00.00.00.00.044.702181.40621.751250.3680.00.00.00.0
101.78240.0761.7621.9826.579146.9591.20427.5380.020.7670.00.9843.118196.4185.79245.04
116.9640.883.6350.0336.93310.21820.54236.5276.0070.8441.9080.034.3357.70223.919.596
1280.047107.845135.60560.7415.5113.9790.8739.289.28918.79513.5388.3734.68622.31111.347.787
1339.3419.03130.27210.8946.22945.10410.79350.80537.17960.22331.50832.44610.51816.59425.89433.175
1430.69840.66938.20523.69441.62656.1153.08140.1319.5229.58931.2918.06616.07242.69837.93430.611
1536.35213.55143.44914.56552.24924.483.89988.44338.66313.76535.31122.7719.55621.49732.92538.524
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.35-0.491.19-0.382-0.084-1.509-2.2770.266-0.479-0.1820.05-0.182-0.557-0.9440.5970.288
02-0.442-0.50.1750.088-1.213-0.32-3.184-0.008-0.6110.320.5330.968-1.1620.221-0.0620.504
03-1.262-0.419-1.933-0.343-1.4610.639-4.40.598-2.6110.585-1.30.551-0.9050.152-1.9291.538
04-4.4-0.075-3.191-4.4-3.2011.651-1.714-2.571-4.4-0.81-2.25-4.4-3.1212.104-0.447-3.203
05-2.624-4.4-4.4-4.42.68-2.644-2.502-3.195-0.104-4.4-3.208-4.4-2.571-4.4-4.4-3.203
062.706-3.233-0.669-2.183-2.644-4.4-4.4-4.4-2.207-4.4-4.4-4.4-2.669-4.4-4.4-4.4
07-1.823-4.42.711-4.4-4.4-4.4-3.233-4.4-4.4-4.4-0.726-3.206-4.4-4.4-2.455-3.241
08-4.4-4.4-1.823-4.4-4.4-4.4-4.4-4.4-2.684-4.42.744-4.4-4.4-4.4-2.698-4.4
09-3.201-3.222-4.4-4.4-4.4-4.4-4.4-4.40.3541.749-0.3572.07-4.4-4.4-4.4-4.4
10-2.680.246-2.689-2.591-1.5131.538-2.989-0.125-4.4-0.402-4.4-3.138-2.21.828-1.6330.362
11-1.459-3.216-2.062-4.42.367-1.093-0.4130.154-1.599-3.246-2.623-4.40.093-1.364-0.264-1.153
120.9331.231.4580.659-1.679-1.98-3.222-1.185-1.185-0.5-0.821-1.284-1.83-0.332-0.992-1.353
130.228-0.488-0.031-1.0320.3880.363-1.040.4810.1720.650.0080.037-1.065-0.622-0.1850.059
14-0.0180.2610.199-0.2730.2840.58-2.210.247-0.463-0.0540.001-0.539-0.6530.3090.192-0.02
150.15-0.820.326-0.7490.509-0.241-1.9991.0320.211-0.8040.121-0.312-0.461-0.3690.0520.207