We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR5A2
(GeneCards)
ModelNR5A2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusdbYCAAGGhCR
Best auROC (human)0.555
Best auROC (mouse)0.959
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)8
Aligned words500
TF familyFTZ-F1-related receptors (NR5) {2.1.5}
TF subfamilyLRH-1 (NR5A2) {2.1.5.0.2}
HGNCHGNC:7984
EntrezGeneGeneID:2494
(SSTAR profile)
UniProt IDNR5A2_HUMAN
UniProt ACO00482
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.494315
0.0005 5.53427
0.0001 7.810410000000001
GTEx tissue expression atlas NR5A2 expression
ReMap ChIP-seq dataset list NR5A2 datasets
Motifs in JASPAR
PCM
ACGT
0191.088.0213.0108.0
0232.0144.0133.0191.0
0319.0222.017.0242.0
042.0474.024.00.0
05492.05.03.00.0
06470.01.015.014.0
071.01.0497.01.0
081.02.0495.02.0
0962.0213.019.0206.0
1011.0414.05.070.0
11373.014.068.045.0
PWM
ACGT
01-0.313-0.3460.528-0.144
02-1.3280.140.0610.42
03-1.8180.569-1.920.655
04-3.5731.324-1.6-4.4
051.361-2.961-3.325-4.4
061.315-3.903-2.034-2.096
07-3.903-3.9031.371-3.903
08-3.903-3.5731.367-3.573
09-0.6890.528-1.8180.495
10-2.3111.189-2.961-0.57
111.085-2.096-0.599-1.0