Model info
| Transcription factor | Nr5a2 | ||||||||
| Model | NR5A2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dbYCAAGGYCR | ||||||||
| Best auROC (human) | 0.537 | ||||||||
| Best auROC (mouse) | 0.957 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | FTZ-F1-related receptors (NR5) {2.1.5} | ||||||||
| TF subfamily | LRH-1 (NR5A2) {2.1.5.0.2} | ||||||||
| MGI | MGI:1346834 | ||||||||
| EntrezGene | GeneID:26424 (SSTAR profile) | ||||||||
| UniProt ID | NR5A2_MOUSE | ||||||||
| UniProt AC | P45448 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr5a2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 103.0 | 81.0 | 208.0 | 108.0 |
| 02 | 34.0 | 144.0 | 129.0 | 193.0 |
| 03 | 18.0 | 195.0 | 15.0 | 272.0 |
| 04 | 1.0 | 458.0 | 39.0 | 2.0 |
| 05 | 493.0 | 1.0 | 5.0 | 1.0 |
| 06 | 460.0 | 0.0 | 28.0 | 12.0 |
| 07 | 3.0 | 1.0 | 493.0 | 3.0 |
| 08 | 0.0 | 1.0 | 498.0 | 1.0 |
| 09 | 43.0 | 188.0 | 23.0 | 246.0 |
| 10 | 9.0 | 398.0 | 9.0 | 84.0 |
| 11 | 381.0 | 22.0 | 61.0 | 36.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.191 | -0.427 | 0.504 | -0.144 |
| 02 | -1.27 | 0.14 | 0.031 | 0.43 |
| 03 | -1.868 | 0.44 | -2.034 | 0.771 |
| 04 | -3.903 | 1.29 | -1.138 | -3.573 |
| 05 | 1.363 | -3.903 | -2.961 | -3.903 |
| 06 | 1.294 | -4.4 | -1.454 | -2.234 |
| 07 | -3.325 | -3.903 | 1.363 | -3.325 |
| 08 | -4.4 | -3.903 | 1.373 | -3.903 |
| 09 | -1.044 | 0.404 | -1.64 | 0.671 |
| 10 | -2.484 | 1.15 | -2.484 | -0.392 |
| 11 | 1.106 | -1.681 | -0.705 | -1.215 |