Transcription factor | Nr5a2 | ||||||||
Model | NR5A2_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | dbYCAAGGYCR | ||||||||
Best auROC (human) | 0.537 | ||||||||
Best auROC (mouse) | 0.957 | ||||||||
Peak sets in benchmark (human) | 4 | ||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 500 | ||||||||
TF family | FTZ-F1-related receptors (NR5) {2.1.5} | ||||||||
TF subfamily | LRH-1 (NR5A2) {2.1.5.0.2} | ||||||||
MGI | MGI:1346834 | ||||||||
EntrezGene | GeneID:26424 (SSTAR profile) | ||||||||
UniProt ID | NR5A2_MOUSE | ||||||||
UniProt AC | P45448 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr5a2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 103.0 | 81.0 | 208.0 | 108.0 |
02 | 34.0 | 144.0 | 129.0 | 193.0 |
03 | 18.0 | 195.0 | 15.0 | 272.0 |
04 | 1.0 | 458.0 | 39.0 | 2.0 |
05 | 493.0 | 1.0 | 5.0 | 1.0 |
06 | 460.0 | 0.0 | 28.0 | 12.0 |
07 | 3.0 | 1.0 | 493.0 | 3.0 |
08 | 0.0 | 1.0 | 498.0 | 1.0 |
09 | 43.0 | 188.0 | 23.0 | 246.0 |
10 | 9.0 | 398.0 | 9.0 | 84.0 |
11 | 381.0 | 22.0 | 61.0 | 36.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.191 | -0.427 | 0.504 | -0.144 |
02 | -1.27 | 0.14 | 0.031 | 0.43 |
03 | -1.868 | 0.44 | -2.034 | 0.771 |
04 | -3.903 | 1.29 | -1.138 | -3.573 |
05 | 1.363 | -3.903 | -2.961 | -3.903 |
06 | 1.294 | -4.4 | -1.454 | -2.234 |
07 | -3.325 | -3.903 | 1.363 | -3.325 |
08 | -4.4 | -3.903 | 1.373 | -3.903 |
09 | -1.044 | 0.404 | -1.64 | 0.671 |
10 | -2.484 | 1.15 | -2.484 | -0.392 |
11 | 1.106 | -1.681 | -0.705 | -1.215 |