Transcription factor | NR6A1 (GeneCards) | ||||||||
Model | NR6A1_HUMAN.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 13 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | RAGKTCAAGKTCA | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 51 | ||||||||
TF family | GCNF-related receptors (NR6) {2.1.6} | ||||||||
TF subfamily | GCNF (NR6A1) {2.1.6.0.1} | ||||||||
HGNC | HGNC:7985 | ||||||||
EntrezGene | GeneID:2649 (SSTAR profile) | ||||||||
UniProt ID | NR6A1_HUMAN | ||||||||
UniProt AC | Q15406 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NR6A1 expression | ||||||||
ReMap ChIP-seq dataset list | NR6A1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 38.694 | 3.472 | 5.361 | 2.472 |
02 | 47.0 | 1.0 | 1.0 | 1.0 |
03 | 2.0 | 0.0 | 46.889 | 1.111 |
04 | 0.0 | 2.0 | 19.0 | 29.0 |
05 | 0.0 | 1.0 | 0.0 | 49.0 |
06 | 1.0 | 49.0 | 0.0 | 0.0 |
07 | 49.0 | 1.0 | 0.0 | 0.0 |
08 | 43.778 | 2.111 | 1.0 | 3.111 |
09 | 0.0 | 1.0 | 44.778 | 4.222 |
10 | 1.0 | 0.0 | 30.0 | 19.0 |
11 | 2.0 | 4.778 | 2.0 | 41.222 |
12 | 2.111 | 42.889 | 0.0 | 5.0 |
13 | 42.778 | 2.111 | 2.111 | 3.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 1.08 | -1.108 | -0.754 | -1.363 |
02 | 1.27 | -1.919 | -1.919 | -1.919 |
03 | -1.51 | -2.623 | 1.267 | -1.864 |
04 | -2.623 | -1.51 | 0.394 | 0.799 |
05 | -2.623 | -1.919 | -2.623 | 1.311 |
06 | -1.919 | 1.311 | -2.623 | -2.623 |
07 | 1.311 | -1.919 | -2.623 | -2.623 |
08 | 1.2 | -1.473 | -1.919 | -1.193 |
09 | -2.623 | -1.919 | 1.222 | -0.952 |
10 | -1.919 | -2.623 | 0.832 | 0.394 |
11 | -1.51 | -0.851 | -1.51 | 1.141 |
12 | -1.473 | 1.18 | -2.623 | -0.813 |
13 | 1.178 | -1.473 | -1.473 | -1.22 |