NR6A1_HUMAN.H11MO.0.B motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

NR6A1
(GeneCards)

Model

NR6A1_HUMAN.H11MO.0.B

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

13

Quality

B

Motif rank

0

Consensus

RAGKTCAAGKTCA

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

51

TF family

GCNF-related receptors (NR6) {2.1.6}

TF subfamily

GCNF (NR6A1) {2.1.6.0.1}

HGNC

EntrezGene

GeneID:2649
(SSTAR profile)

UniProt ID

UniProt AC

Q15406
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.254415
0.0005	5.34412
0.0001	7.5448450000000005

GTEx tissue expression atlas

NR6A1 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	38.694	3.472	5.361	2.472
02	47.0	1.0	1.0	1.0
03	2.0	0.0	46.889	1.111
04	0.0	2.0	19.0	29.0
05	0.0	1.0	0.0	49.0
06	1.0	49.0	0.0	0.0
07	49.0	1.0	0.0	0.0
08	43.778	2.111	1.0	3.111
09	0.0	1.0	44.778	4.222
10	1.0	0.0	30.0	19.0
11	2.0	4.778	2.0	41.222
12	2.111	42.889	0.0	5.0
13	42.778	2.111	2.111	3.0

PWM

	A	C	G	T
01	1.08	-1.108	-0.754	-1.363
02	1.27	-1.919	-1.919	-1.919
03	-1.51	-2.623	1.267	-1.864
04	-2.623	-1.51	0.394	0.799
05	-2.623	-1.919	-2.623	1.311
06	-1.919	1.311	-2.623	-2.623
07	1.311	-1.919	-2.623	-2.623
08	1.2	-1.473	-1.919	-1.193
09	-2.623	-1.919	1.222	-0.952
10	-1.919	-2.623	0.832	0.394
11	-1.51	-0.851	-1.51	1.141
12	-1.473	1.18	-2.623	-0.813
13	1.178	-1.473	-1.473	-1.22