We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR6A1
(GeneCards)
ModelNR6A1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
B
Motif rank
0
ConsensusRAGKTCAAGKTCA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words51
TF familyGCNF-related receptors (NR6) {2.1.6}
TF subfamilyGCNF (NR6A1) {2.1.6.0.1}
HGNCHGNC:7985
EntrezGeneGeneID:2649
(SSTAR profile)
UniProt IDNR6A1_HUMAN
UniProt ACQ15406
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.254415
0.0005 5.34412
0.0001 7.5448450000000005
GTEx tissue expression atlas NR6A1 expression
ReMap ChIP-seq dataset list NR6A1 datasets
Motifs in JASPAR
PCM
ACGT
0138.6943.4725.3612.472
0247.01.01.01.0
032.00.046.8891.111
040.02.019.029.0
050.01.00.049.0
061.049.00.00.0
0749.01.00.00.0
0843.7782.1111.03.111
090.01.044.7784.222
101.00.030.019.0
112.04.7782.041.222
122.11142.8890.05.0
1342.7782.1112.1113.0
PWM
ACGT
011.08-1.108-0.754-1.363
021.27-1.919-1.919-1.919
03-1.51-2.6231.267-1.864
04-2.623-1.510.3940.799
05-2.623-1.919-2.6231.311
06-1.9191.311-2.623-2.623
071.311-1.919-2.623-2.623
081.2-1.473-1.919-1.193
09-2.623-1.9191.222-0.952
10-1.919-2.6230.8320.394
11-1.51-0.851-1.511.141
12-1.4731.18-2.623-0.813
131.178-1.473-1.473-1.22