We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr6a1
ModelNR6A1_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
C
Motif rank
0
ConsensusnvdddbYCAWRKbYRn
Best auROC (human)
Best auROC (mouse)0.802
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)5
Aligned words505
TF familyGCNF-related receptors (NR6) {2.1.6}
TF subfamilyGCNF (NR6A1) {2.1.6.0.1}
MGIMGI:1352459
EntrezGeneGeneID:14536
(SSTAR profile)
UniProt IDNR6A1_MOUSE
UniProt ACQ64249
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.89751
0.0005 12.47486
0.0001 15.73971
GTEx tissue expression atlas Nr6a1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0121.040.033.029.056.057.06.019.039.041.019.08.030.057.038.06.0
0262.011.047.026.0138.016.012.029.036.015.028.017.024.05.021.012.0
03179.026.021.034.020.013.06.08.069.07.021.011.028.09.024.023.0
0464.013.0188.031.022.03.011.019.023.03.028.018.016.07.019.034.0
057.028.054.036.04.010.02.010.04.018.0107.0117.02.019.041.040.0
061.08.00.08.04.034.00.037.03.087.06.0108.08.046.01.0148.0
070.014.02.00.07.0162.03.03.02.03.02.00.06.0277.017.01.0
0813.02.00.00.0421.026.07.02.022.00.02.00.03.01.00.00.0
09361.022.022.054.020.00.02.07.07.00.01.01.01.01.00.00.0
1051.04.0306.028.05.01.012.05.02.01.021.01.04.00.046.012.0
119.03.037.013.00.01.02.03.017.05.0227.0136.03.00.036.07.0
122.011.06.010.04.00.01.04.012.099.057.0134.07.030.030.092.0
136.016.00.03.09.0105.05.021.010.071.03.010.013.0174.016.037.0
1423.02.08.05.0313.018.015.020.07.02.08.07.033.05.022.011.0
1586.065.0133.092.06.06.02.013.012.013.08.020.022.02.06.013.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.390.2460.056-0.0720.580.597-1.598-0.4880.2210.271-0.488-1.326-0.0380.5970.195-1.598
020.681-1.020.406-0.1791.478-0.656-0.936-0.0720.142-0.719-0.106-0.597-0.258-1.768-0.39-0.936
031.737-0.179-0.390.085-0.437-0.858-1.598-1.3260.787-1.452-0.39-1.02-0.106-1.213-0.258-0.3
040.713-0.8581.786-0.006-0.344-2.232-1.02-0.488-0.3-2.232-0.106-0.541-0.656-1.452-0.4880.085
05-1.452-0.1060.5440.142-1.973-1.112-2.582-1.112-1.973-0.5411.2241.313-2.582-0.4880.2710.246
06-3.124-1.326-4.398-1.326-1.9730.085-4.3980.169-2.2321.018-1.5981.233-1.3260.385-3.1241.547
07-4.398-0.786-2.582-4.398-1.4521.638-2.232-2.232-2.582-2.232-2.582-4.398-1.5982.173-0.597-3.124
08-0.858-2.582-4.398-4.3982.591-0.179-1.452-2.582-0.344-4.398-2.582-4.398-2.232-3.124-4.398-4.398
092.438-0.344-0.3440.544-0.437-4.398-2.582-1.452-1.452-4.398-3.124-3.124-3.124-3.124-4.398-4.398
100.487-1.9732.272-0.106-1.768-3.124-0.936-1.768-2.582-3.124-0.39-3.124-1.973-4.3980.385-0.936
11-1.213-2.2320.169-0.858-4.398-3.124-2.582-2.232-0.597-1.7681.9741.463-2.232-4.3980.142-1.452
12-2.582-1.02-1.598-1.112-1.973-4.398-3.124-1.973-0.9361.1470.5971.448-1.452-0.038-0.0381.074
13-1.598-0.656-4.398-2.232-1.2131.205-1.768-0.39-1.1120.816-2.232-1.112-0.8581.709-0.6560.169
14-0.3-2.582-1.326-1.7682.295-0.541-0.719-0.437-1.452-2.582-1.326-1.4520.056-1.768-0.344-1.02
151.0060.7281.4411.074-1.598-1.598-2.582-0.858-0.936-0.858-1.326-0.437-0.344-2.582-1.598-0.858