Model info
| Transcription factor | NRF1 (GeneCards) | ||||||||
| Model | NRF1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bdSYGCGCMKGCGCvdv | ||||||||
| Best auROC (human) | 0.999 | ||||||||
| Best auROC (mouse) | 0.997 | ||||||||
| Peak sets in benchmark (human) | 31 | ||||||||
| Peak sets in benchmark (mouse) | 23 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | NRF {0.0.6} | ||||||||
| TF subfamily | NRF-1 (alpha-pal) {0.0.6.0.1} | ||||||||
| HGNC | HGNC:7996 | ||||||||
| EntrezGene | GeneID:4899 (SSTAR profile) | ||||||||
| UniProt ID | NRF1_HUMAN | ||||||||
| UniProt AC | Q16656 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NRF1 expression | ||||||||
| ReMap ChIP-seq dataset list | NRF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 54.0 | 279.0 | 73.0 | 94.0 |
| 02 | 214.0 | 62.0 | 79.0 | 145.0 |
| 03 | 27.0 | 257.0 | 171.0 | 45.0 |
| 04 | 28.0 | 50.0 | 23.0 | 399.0 |
| 05 | 45.0 | 1.0 | 454.0 | 0.0 |
| 06 | 14.0 | 484.0 | 2.0 | 0.0 |
| 07 | 5.0 | 0.0 | 494.0 | 1.0 |
| 08 | 1.0 | 496.0 | 1.0 | 2.0 |
| 09 | 391.0 | 69.0 | 24.0 | 16.0 |
| 10 | 20.0 | 38.0 | 82.0 | 360.0 |
| 11 | 4.0 | 5.0 | 488.0 | 3.0 |
| 12 | 7.0 | 457.0 | 1.0 | 35.0 |
| 13 | 0.0 | 21.0 | 433.0 | 46.0 |
| 14 | 4.0 | 400.0 | 7.0 | 89.0 |
| 15 | 213.0 | 97.0 | 158.0 | 32.0 |
| 16 | 140.0 | 70.0 | 189.0 | 101.0 |
| 17 | 57.0 | 148.0 | 261.0 | 34.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.823 | 0.796 | -0.529 | -0.281 |
| 02 | 0.533 | -0.689 | -0.452 | 0.147 |
| 03 | -1.489 | 0.714 | 0.31 | -1.0 |
| 04 | -1.454 | -0.898 | -1.64 | 1.152 |
| 05 | -1.0 | -3.903 | 1.281 | -4.4 |
| 06 | -2.096 | 1.345 | -3.573 | -4.4 |
| 07 | -2.961 | -4.4 | 1.365 | -3.903 |
| 08 | -3.903 | 1.369 | -3.903 | -3.573 |
| 09 | 1.132 | -0.584 | -1.6 | -1.975 |
| 10 | -1.77 | -1.163 | -0.415 | 1.05 |
| 11 | -3.126 | -2.961 | 1.353 | -3.325 |
| 12 | -2.694 | 1.287 | -3.903 | -1.242 |
| 13 | -4.4 | -1.725 | 1.234 | -0.979 |
| 14 | -3.126 | 1.155 | -2.694 | -0.335 |
| 15 | 0.528 | -0.25 | 0.232 | -1.328 |
| 16 | 0.112 | -0.57 | 0.409 | -0.21 |
| 17 | -0.771 | 0.167 | 0.73 | -1.27 |