We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNRF1
(GeneCards)
ModelNRF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusbdSYGCGCMKGCGCvdv
Best auROC (human)0.999
Best auROC (mouse)0.997
Peak sets in benchmark (human)31
Peak sets in benchmark (mouse)23
Aligned words501
TF familyNRF {0.0.6}
TF subfamilyNRF-1 (alpha-pal) {0.0.6.0.1}
HGNCHGNC:7996
EntrezGeneGeneID:4899
(SSTAR profile)
UniProt IDNRF1_HUMAN
UniProt ACQ16656
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -0.7774399999999999
0.0005 0.44051000000000007
0.0001 3.00901
GTEx tissue expression atlas NRF1 expression
ReMap ChIP-seq dataset list NRF1 datasets
Motifs in JASPAR
PCM
ACGT
0154.0279.073.094.0
02214.062.079.0145.0
0327.0257.0171.045.0
0428.050.023.0399.0
0545.01.0454.00.0
0614.0484.02.00.0
075.00.0494.01.0
081.0496.01.02.0
09391.069.024.016.0
1020.038.082.0360.0
114.05.0488.03.0
127.0457.01.035.0
130.021.0433.046.0
144.0400.07.089.0
15213.097.0158.032.0
16140.070.0189.0101.0
1757.0148.0261.034.0
PWM
ACGT
01-0.8230.796-0.529-0.281
020.533-0.689-0.4520.147
03-1.4890.7140.31-1.0
04-1.454-0.898-1.641.152
05-1.0-3.9031.281-4.4
06-2.0961.345-3.573-4.4
07-2.961-4.41.365-3.903
08-3.9031.369-3.903-3.573
091.132-0.584-1.6-1.975
10-1.77-1.163-0.4151.05
11-3.126-2.9611.353-3.325
12-2.6941.287-3.903-1.242
13-4.4-1.7251.234-0.979
14-3.1261.155-2.694-0.335
150.528-0.250.232-1.328
160.112-0.570.409-0.21
17-0.7710.1670.73-1.27