Model info
| Transcription factor | Nrf1 | ||||||||
| Model | NRF1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YdvYGCGCMKGCGCvvv | ||||||||
| Best auROC (human) | 0.999 | ||||||||
| Best auROC (mouse) | 0.997 | ||||||||
| Peak sets in benchmark (human) | 31 | ||||||||
| Peak sets in benchmark (mouse) | 23 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NRF {0.0.6} | ||||||||
| TF subfamily | NRF-1 (alpha-pal) {0.0.6.0.1} | ||||||||
| MGI | MGI:1332235 | ||||||||
| EntrezGene | GeneID:18181 (SSTAR profile) | ||||||||
| UniProt ID | NRF1_MOUSE | ||||||||
| UniProt AC | Q9WU00 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nrf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 33.0 | 324.0 | 51.0 | 92.0 |
| 02 | 227.0 | 66.0 | 92.0 | 115.0 |
| 03 | 41.0 | 251.0 | 172.0 | 36.0 |
| 04 | 23.0 | 61.0 | 37.0 | 379.0 |
| 05 | 22.0 | 4.0 | 474.0 | 0.0 |
| 06 | 20.0 | 466.0 | 14.0 | 0.0 |
| 07 | 1.0 | 2.0 | 496.0 | 1.0 |
| 08 | 2.0 | 491.0 | 4.0 | 3.0 |
| 09 | 355.0 | 88.0 | 26.0 | 31.0 |
| 10 | 15.0 | 40.0 | 83.0 | 362.0 |
| 11 | 0.0 | 4.0 | 495.0 | 1.0 |
| 12 | 1.0 | 473.0 | 1.0 | 25.0 |
| 13 | 3.0 | 12.0 | 447.0 | 38.0 |
| 14 | 1.0 | 447.0 | 2.0 | 50.0 |
| 15 | 176.0 | 117.0 | 171.0 | 36.0 |
| 16 | 134.0 | 96.0 | 211.0 | 59.0 |
| 17 | 48.0 | 175.0 | 242.0 | 35.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.298 | 0.945 | -0.879 | -0.302 |
| 02 | 0.591 | -0.628 | -0.302 | -0.082 |
| 03 | -1.09 | 0.691 | 0.316 | -1.215 |
| 04 | -1.64 | -0.705 | -1.189 | 1.101 |
| 05 | -1.681 | -3.126 | 1.324 | -4.4 |
| 06 | -1.77 | 1.307 | -2.096 | -4.4 |
| 07 | -3.903 | -3.573 | 1.369 | -3.903 |
| 08 | -3.573 | 1.359 | -3.126 | -3.325 |
| 09 | 1.036 | -0.346 | -1.525 | -1.358 |
| 10 | -2.034 | -1.114 | -0.403 | 1.055 |
| 11 | -4.4 | -3.126 | 1.367 | -3.903 |
| 12 | -3.903 | 1.322 | -3.903 | -1.561 |
| 13 | -3.325 | -2.234 | 1.265 | -1.163 |
| 14 | -3.903 | 1.265 | -3.573 | -0.898 |
| 15 | 0.339 | -0.065 | 0.31 | -1.215 |
| 16 | 0.069 | -0.26 | 0.519 | -0.737 |
| 17 | -0.938 | 0.333 | 0.655 | -1.242 |