Transcription factor | OLIG1 (GeneCards) | ||||||||
Model | OLIG1_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | HT-SELEX | ||||||||
Model release | HOCOMOCOv10 | ||||||||
Model length | 14 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | AMCATATGTTTWbb | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 495 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
HGNC | HGNC:16983 | ||||||||
EntrezGene | GeneID:116448 (SSTAR profile) | ||||||||
UniProt ID | OLIG1_HUMAN | ||||||||
UniProt AC | Q8TAK6 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | OLIG1 expression | ||||||||
ReMap ChIP-seq dataset list | OLIG1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 411.0 | 23.0 | 37.0 | 24.0 |
02 | 194.25 | 273.25 | 27.25 | 0.25 |
03 | 0.0 | 495.0 | 0.0 | 0.0 |
04 | 495.0 | 0.0 | 0.0 | 0.0 |
05 | 0.0 | 0.0 | 0.0 | 495.0 |
06 | 495.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 495.0 |
08 | 0.0 | 0.0 | 495.0 | 0.0 |
09 | 0.0 | 11.0 | 71.0 | 413.0 |
10 | 0.0 | 3.0 | 0.0 | 492.0 |
11 | 17.75 | 25.75 | 11.75 | 439.75 |
12 | 68.0 | 61.0 | 24.0 | 342.0 |
13 | 60.0 | 77.0 | 61.0 | 297.0 |
14 | 81.75 | 109.75 | 100.75 | 202.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 1.192 | -1.63 | -1.179 | -1.59 |
02 | 0.446 | 0.785 | -1.47 | -4.242 |
03 | -4.392 | 1.377 | -4.392 | -4.392 |
04 | 1.377 | -4.392 | -4.392 | -4.392 |
05 | -4.392 | -4.392 | -4.392 | 1.377 |
06 | 1.377 | -4.392 | -4.392 | -4.392 |
07 | -4.392 | -4.392 | -4.392 | 1.377 |
08 | -4.392 | -4.392 | 1.377 | -4.392 |
09 | -4.392 | -2.301 | -0.546 | 1.196 |
10 | -4.392 | -3.315 | -4.392 | 1.371 |
11 | -1.871 | -1.524 | -2.243 | 1.259 |
12 | -0.589 | -0.695 | -1.59 | 1.009 |
13 | -0.711 | -0.467 | -0.695 | 0.868 |
14 | -0.408 | -0.118 | -0.203 | 0.489 |