We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOLIG1
(GeneCards)
ModelOLIG1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length14
Quality
D
Motif rank
0
ConsensusAMCATATGTTTWbb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words495
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:16983
EntrezGeneGeneID:116448
(SSTAR profile)
UniProt IDOLIG1_HUMAN
UniProt ACQ8TAK6
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.6453800000000001
0.0005 2.28995
0.0001 5.63441
GTEx tissue expression atlas OLIG1 expression
ReMap ChIP-seq dataset list OLIG1 datasets
Motifs in JASPAR
MA0826.1 (OLIG1; Homo sapiens)
PCM
ACGT
01411.023.037.024.0
02194.25273.2527.250.25
030.0495.00.00.0
04495.00.00.00.0
050.00.00.0495.0
06495.00.00.00.0
070.00.00.0495.0
080.00.0495.00.0
090.011.071.0413.0
100.03.00.0492.0
1117.7525.7511.75439.75
1268.061.024.0342.0
1360.077.061.0297.0
1481.75109.75100.75202.75
PWM
ACGT
011.192-1.63-1.179-1.59
020.4460.785-1.47-4.242
03-4.3921.377-4.392-4.392
041.377-4.392-4.392-4.392
05-4.392-4.392-4.3921.377
061.377-4.392-4.392-4.392
07-4.392-4.392-4.3921.377
08-4.392-4.3921.377-4.392
09-4.392-2.301-0.5461.196
10-4.392-3.315-4.3921.371
11-1.871-1.524-2.2431.259
12-0.589-0.695-1.591.009
13-0.711-0.467-0.6950.868
14-0.408-0.118-0.2030.489