Model info
| Transcription factor | Olig2 | ||||||||
| Model | OLIG2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | MCAKCTGYYbbbhdbhhb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.925 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 19 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| MGI | MGI:1355331 | ||||||||
| EntrezGene | GeneID:50913 (SSTAR profile) | ||||||||
| UniProt ID | OLIG2_MOUSE | ||||||||
| UniProt AC | Q9EQW6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Olig2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 108.0 | 310.0 | 71.0 | 11.0 |
| 02 | 76.0 | 413.0 | 2.0 | 9.0 |
| 03 | 420.0 | 8.0 | 13.0 | 59.0 |
| 04 | 4.0 | 13.0 | 245.0 | 238.0 |
| 05 | 77.0 | 392.0 | 25.0 | 6.0 |
| 06 | 17.0 | 7.0 | 3.0 | 473.0 |
| 07 | 0.0 | 7.0 | 456.0 | 37.0 |
| 08 | 6.0 | 181.0 | 90.0 | 223.0 |
| 09 | 12.0 | 126.0 | 17.0 | 345.0 |
| 10 | 40.0 | 129.0 | 77.0 | 254.0 |
| 11 | 49.0 | 216.0 | 93.0 | 142.0 |
| 12 | 52.0 | 245.0 | 57.0 | 146.0 |
| 13 | 88.0 | 191.0 | 83.0 | 138.0 |
| 14 | 134.0 | 43.0 | 96.0 | 227.0 |
| 15 | 41.0 | 130.0 | 146.0 | 183.0 |
| 16 | 94.0 | 226.0 | 68.0 | 112.0 |
| 17 | 114.0 | 115.0 | 51.0 | 220.0 |
| 18 | 65.0 | 99.0 | 170.0 | 166.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.144 | 0.901 | -0.556 | -2.311 |
| 02 | -0.49 | 1.187 | -3.573 | -2.484 |
| 03 | 1.203 | -2.584 | -2.163 | -0.737 |
| 04 | -3.126 | -2.163 | 0.667 | 0.638 |
| 05 | -0.477 | 1.135 | -1.561 | -2.819 |
| 06 | -1.92 | -2.694 | -3.325 | 1.322 |
| 07 | -4.4 | -2.694 | 1.285 | -1.189 |
| 08 | -2.819 | 0.366 | -0.324 | 0.573 |
| 09 | -2.234 | 0.008 | -1.92 | 1.007 |
| 10 | -1.114 | 0.031 | -0.477 | 0.703 |
| 11 | -0.918 | 0.542 | -0.291 | 0.126 |
| 12 | -0.86 | 0.667 | -0.771 | 0.154 |
| 13 | -0.346 | 0.42 | -0.403 | 0.098 |
| 14 | 0.069 | -1.044 | -0.26 | 0.591 |
| 15 | -1.09 | 0.039 | 0.154 | 0.377 |
| 16 | -0.281 | 0.587 | -0.599 | -0.108 |
| 17 | -0.091 | -0.082 | -0.879 | 0.56 |
| 18 | -0.643 | -0.23 | 0.304 | 0.281 |