We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOLIG3
(GeneCards)
ModelOLIG3_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusRMCATATGKTn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words3197
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:18003
EntrezGeneGeneID:167826
(SSTAR profile)
UniProt IDOLIG3_HUMAN
UniProt ACQ7RTU3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.215325
0.0005 4.437035
0.0001 7.129405
GTEx tissue expression atlas OLIG3 expression
ReMap ChIP-seq dataset list OLIG3 datasets
Motifs in JASPAR
PCM
ACGT
011846.5149.5840.5239.5
02376.252404.25260.2535.25
03566.252492.259.258.25
043010.258.2547.2510.25
053.01.043.03029.0
063030.031.012.03.0
0714.045.04.03013.0
083.255.253046.2521.25
0918.5400.5917.51739.5
1036.5284.569.52685.5
11559.0736.0647.01134.0
PWM
ACGT
010.874-1.6270.089-1.161
02-0.7121.138-1.078-3.03
03-0.3051.174-4.227-4.32
041.363-4.32-2.751-4.142
05-5.037-5.546-2.8411.369
061.369-3.151-4.008-5.037
07-3.875-2.797-4.8551.364
08-4.988-4.6661.375-3.501
09-3.627-0.650.1760.815
10-2.997-0.99-2.3781.249
11-0.318-0.044-0.1720.388