Model info
| Transcription factor | OLIG3 (GeneCards) | ||||||||
| Model | OLIG3_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RMCATATGKTn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 3197 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| HGNC | HGNC:18003 | ||||||||
| EntrezGene | GeneID:167826 (SSTAR profile) | ||||||||
| UniProt ID | OLIG3_HUMAN | ||||||||
| UniProt AC | Q7RTU3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | OLIG3 expression | ||||||||
| ReMap ChIP-seq dataset list | OLIG3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1846.5 | 149.5 | 840.5 | 239.5 |
| 02 | 376.25 | 2404.25 | 260.25 | 35.25 |
| 03 | 566.25 | 2492.25 | 9.25 | 8.25 |
| 04 | 3010.25 | 8.25 | 47.25 | 10.25 |
| 05 | 3.0 | 1.0 | 43.0 | 3029.0 |
| 06 | 3030.0 | 31.0 | 12.0 | 3.0 |
| 07 | 14.0 | 45.0 | 4.0 | 3013.0 |
| 08 | 3.25 | 5.25 | 3046.25 | 21.25 |
| 09 | 18.5 | 400.5 | 917.5 | 1739.5 |
| 10 | 36.5 | 284.5 | 69.5 | 2685.5 |
| 11 | 559.0 | 736.0 | 647.0 | 1134.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.874 | -1.627 | 0.089 | -1.161 |
| 02 | -0.712 | 1.138 | -1.078 | -3.03 |
| 03 | -0.305 | 1.174 | -4.227 | -4.32 |
| 04 | 1.363 | -4.32 | -2.751 | -4.142 |
| 05 | -5.037 | -5.546 | -2.841 | 1.369 |
| 06 | 1.369 | -3.151 | -4.008 | -5.037 |
| 07 | -3.875 | -2.797 | -4.855 | 1.364 |
| 08 | -4.988 | -4.666 | 1.375 | -3.501 |
| 09 | -3.627 | -0.65 | 0.176 | 0.815 |
| 10 | -2.997 | -0.99 | -2.378 | 1.249 |
| 11 | -0.318 | -0.044 | -0.172 | 0.388 |