We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOTX1
(GeneCards)
ModelOTX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
0
ConsensusnGGATTAn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words8
TF familyPaired-related HD factors {3.1.3}
TF subfamilyOTX {3.1.3.17}
HGNCHGNC:8521
EntrezGeneGeneID:5013
(SSTAR profile)
UniProt IDOTX1_HUMAN
UniProt ACP32242
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.11337
0.0005 5.892635
0.0001 6.680255000000001
GTEx tissue expression atlas OTX1 expression
ReMap ChIP-seq dataset list OTX1 datasets
Motifs in JASPAR
PCM
ACGT
013.6551.4481.4481.448
021.2410.05.9310.828
030.00.08.00.0
045.3792.6210.00.0
050.00.00.08.0
060.00.00.08.0
078.00.00.00.0
082.2762.2762.8280.621
PWM
ACGT
010.505-0.247-0.247-0.247
02-0.358-1.5780.94-0.626
03-1.578-1.5781.218-1.578
040.8510.22-1.578-1.578
05-1.578-1.578-1.5781.218
06-1.578-1.578-1.5781.218
071.218-1.578-1.578-1.578
080.1040.1040.284-0.793