We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOTX2
(GeneCards)
ModelOTX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusndddRGGATTAdvn
Best auROC (human)0.879
Best auROC (mouse)0.92
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)18
Aligned words500
TF familyPaired-related HD factors {3.1.3}
TF subfamilyOTX {3.1.3.17}
HGNCHGNC:8522
EntrezGeneGeneID:5015
(SSTAR profile)
UniProt IDOTX2_HUMAN
UniProt ACP32243
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.60606
0.0005 12.643410000000001
0.0001 16.21106
GTEx tissue expression atlas OTX2 expression
ReMap ChIP-seq dataset list OTX2 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0143.010.053.012.043.011.012.021.023.031.044.017.071.018.058.033.0
02100.015.048.017.031.07.09.023.050.038.057.022.021.012.032.018.0
0385.011.086.020.021.08.09.034.056.017.059.014.05.017.042.016.0
0471.08.084.04.031.05.011.06.068.017.0101.010.020.06.053.05.0
0523.02.0165.00.019.01.015.01.063.04.0179.03.03.00.022.00.0
060.01.0106.01.00.01.06.00.011.00.0370.00.00.00.04.00.0
079.02.00.00.02.00.00.00.0409.068.04.05.01.00.00.00.0
080.01.00.0420.00.00.00.070.00.00.00.04.00.00.00.05.0
090.00.00.00.00.00.00.01.00.00.00.00.00.00.00.0499.0
100.00.00.00.00.00.00.00.00.00.00.00.0412.02.05.081.0
11162.039.0173.038.01.01.00.00.01.00.03.01.034.04.035.08.0
1263.053.073.09.020.018.01.05.033.083.064.031.01.027.014.05.0
1329.018.061.09.078.032.09.062.048.035.041.028.07.07.021.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.316-1.1140.523-0.9380.316-1.022-0.938-0.392-0.302-0.0080.339-0.5990.814-0.5430.6130.054
021.155-0.7210.425-0.599-0.008-1.454-1.215-0.3020.4650.1930.595-0.346-0.392-0.9380.023-0.543
030.993-1.0221.004-0.439-0.392-1.328-1.2150.0830.578-0.5990.63-0.788-1.77-0.5990.293-0.658
040.814-1.3280.981-1.975-0.008-1.77-1.022-1.60.771-0.5991.165-1.114-0.439-1.60.523-1.77
05-0.302-2.5841.654-4.4-0.49-3.126-0.721-3.1260.695-1.9751.735-2.234-2.234-4.4-0.346-4.4
06-4.4-3.1261.213-3.126-4.4-3.126-1.6-4.4-1.022-4.42.46-4.4-4.4-4.4-1.975-4.4
07-1.215-2.584-4.4-4.4-2.584-4.4-4.4-4.42.560.771-1.975-1.77-3.126-4.4-4.4-4.4
08-4.4-3.126-4.42.587-4.4-4.4-4.40.8-4.4-4.4-4.4-1.975-4.4-4.4-4.4-1.77
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.42.759
10-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.568-2.584-1.770.945
111.6360.2191.7010.193-3.126-3.126-4.4-4.4-3.126-4.4-2.234-3.1260.083-1.9750.112-1.328
120.6950.5230.841-1.215-0.439-0.543-3.126-1.770.0540.9690.711-0.008-3.126-0.144-0.788-1.77
13-0.074-0.5430.663-1.2150.9070.023-1.2150.6790.4250.1120.269-0.108-1.454-1.454-0.392-0.721