Check the newest release v12
Model info
Transcription factorOTX2
(GeneCards)
ModelOTX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusndddRGGATTAdvn
Best auROC (human)0.879
Best auROC (mouse)0.92
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)18
Aligned words500
TF familyPaired-related HD factors {3.1.3}
TF subfamilyOTX {3.1.3.17}
HGNCHGNC:8522
EntrezGeneGeneID:5015
(SSTAR profile)
UniProt IDOTX2_HUMAN
UniProt ACP32243
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.60606
0.0005 12.643410000000001
0.0001 16.21106
GTEx tissue expression atlas OTX2 expression
ReMap ChIP-seq dataset list OTX2 datasets
Motifs in JASPAR
MA0712.1 (OTX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0143.010.053.012.043.011.012.021.023.031.044.017.071.018.058.033.0
02100.015.048.017.031.07.09.023.050.038.057.022.021.012.032.018.0
0385.011.086.020.021.08.09.034.056.017.059.014.05.017.042.016.0
0471.08.084.04.031.05.011.06.068.017.0101.010.020.06.053.05.0
0523.02.0165.00.019.01.015.01.063.04.0179.03.03.00.022.00.0
060.01.0106.01.00.01.06.00.011.00.0370.00.00.00.04.00.0
079.02.00.00.02.00.00.00.0409.068.04.05.01.00.00.00.0
080.01.00.0420.00.00.00.070.00.00.00.04.00.00.00.05.0
090.00.00.00.00.00.00.01.00.00.00.00.00.00.00.0499.0
100.00.00.00.00.00.00.00.00.00.00.00.0412.02.05.081.0
11162.039.0173.038.01.01.00.00.01.00.03.01.034.04.035.08.0
1263.053.073.09.020.018.01.05.033.083.064.031.01.027.014.05.0
1329.018.061.09.078.032.09.062.048.035.041.028.07.07.021.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.316-1.1140.523-0.9380.316-1.022-0.938-0.392-0.302-0.0080.339-0.5990.814-0.5430.6130.054
021.155-0.7210.425-0.599-0.008-1.454-1.215-0.3020.4650.1930.595-0.346-0.392-0.9380.023-0.543
030.993-1.0221.004-0.439-0.392-1.328-1.2150.0830.578-0.5990.63-0.788-1.77-0.5990.293-0.658
040.814-1.3280.981-1.975-0.008-1.77-1.022-1.60.771-0.5991.165-1.114-0.439-1.60.523-1.77
05-0.302-2.5841.654-4.4-0.49-3.126-0.721-3.1260.695-1.9751.735-2.234-2.234-4.4-0.346-4.4
06-4.4-3.1261.213-3.126-4.4-3.126-1.6-4.4-1.022-4.42.46-4.4-4.4-4.4-1.975-4.4
07-1.215-2.584-4.4-4.4-2.584-4.4-4.4-4.42.560.771-1.975-1.77-3.126-4.4-4.4-4.4
08-4.4-3.126-4.42.587-4.4-4.4-4.40.8-4.4-4.4-4.4-1.975-4.4-4.4-4.4-1.77
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.42.759
10-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.568-2.584-1.770.945
111.6360.2191.7010.193-3.126-3.126-4.4-4.4-3.126-4.4-2.234-3.1260.083-1.9750.112-1.328
120.6950.5230.841-1.215-0.439-0.543-3.126-1.770.0540.9690.711-0.008-3.126-0.144-0.788-1.77
13-0.074-0.5430.663-1.2150.9070.023-1.2150.6790.4250.1120.269-0.108-1.454-1.454-0.392-0.721