Model info
| Transcription factor | OTX2 (GeneCards) | ||||||||
| Model | OTX2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddRGGATTAdv | ||||||||
| Best auROC (human) | 0.863 | ||||||||
| Best auROC (mouse) | 0.886 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 18 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | OTX {3.1.3.17} | ||||||||
| HGNC | HGNC:8522 | ||||||||
| EntrezGene | GeneID:5015 (SSTAR profile) | ||||||||
| UniProt ID | OTX2_HUMAN | ||||||||
| UniProt AC | P32243 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | OTX2 expression | ||||||||
| ReMap ChIP-seq dataset list | OTX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 222.0 | 70.0 | 128.0 | 80.0 |
| 02 | 190.0 | 30.0 | 209.0 | 71.0 |
| 03 | 167.0 | 41.0 | 264.0 | 28.0 |
| 04 | 105.0 | 1.0 | 386.0 | 8.0 |
| 05 | 16.0 | 20.0 | 462.0 | 2.0 |
| 06 | 418.0 | 76.0 | 2.0 | 4.0 |
| 07 | 1.0 | 3.0 | 2.0 | 494.0 |
| 08 | 7.0 | 10.0 | 4.0 | 479.0 |
| 09 | 442.0 | 2.0 | 11.0 | 45.0 |
| 10 | 214.0 | 25.0 | 201.0 | 60.0 |
| 11 | 104.0 | 179.0 | 178.0 | 39.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.569 | -0.57 | 0.023 | -0.439 |
| 02 | 0.415 | -1.389 | 0.509 | -0.556 |
| 03 | 0.287 | -1.09 | 0.741 | -1.454 |
| 04 | -0.172 | -3.903 | 1.119 | -2.584 |
| 05 | -1.975 | -1.77 | 1.298 | -3.573 |
| 06 | 1.199 | -0.49 | -3.573 | -3.126 |
| 07 | -3.903 | -3.325 | -3.573 | 1.365 |
| 08 | -2.694 | -2.394 | -3.126 | 1.334 |
| 09 | 1.254 | -3.573 | -2.311 | -1.0 |
| 10 | 0.533 | -1.561 | 0.47 | -0.721 |
| 11 | -0.181 | 0.355 | 0.35 | -1.138 |