We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOTX2
(GeneCards)
ModelOTX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusddRGGATTAdv
Best auROC (human)0.863
Best auROC (mouse)0.886
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)18
Aligned words500
TF familyPaired-related HD factors {3.1.3}
TF subfamilyOTX {3.1.3.17}
HGNCHGNC:8522
EntrezGeneGeneID:5015
(SSTAR profile)
UniProt IDOTX2_HUMAN
UniProt ACP32243
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.335055
0.0005 6.1928
0.0001 7.955209999999999
GTEx tissue expression atlas OTX2 expression
ReMap ChIP-seq dataset list OTX2 datasets
Motifs in JASPAR
PCM
ACGT
01222.070.0128.080.0
02190.030.0209.071.0
03167.041.0264.028.0
04105.01.0386.08.0
0516.020.0462.02.0
06418.076.02.04.0
071.03.02.0494.0
087.010.04.0479.0
09442.02.011.045.0
10214.025.0201.060.0
11104.0179.0178.039.0
PWM
ACGT
010.569-0.570.023-0.439
020.415-1.3890.509-0.556
030.287-1.090.741-1.454
04-0.172-3.9031.119-2.584
05-1.975-1.771.298-3.573
061.199-0.49-3.573-3.126
07-3.903-3.325-3.5731.365
08-2.694-2.394-3.1261.334
091.254-3.573-2.311-1.0
100.533-1.5610.47-0.721
11-0.1810.3550.35-1.138