Model info
| Transcription factor | Otx2 | ||||||||
| Model | OTX2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvddRGGATTAd | ||||||||
| Best auROC (human) | 0.847 | ||||||||
| Best auROC (mouse) | 0.904 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 18 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | OTX {3.1.3.17} | ||||||||
| MGI | MGI:97451 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | OTX2_MOUSE | ||||||||
| UniProt AC | P80206 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Otx2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 124.0 | 74.0 | 84.0 | 218.0 |
| 02 | 231.0 | 72.0 | 130.0 | 67.0 |
| 03 | 264.0 | 50.0 | 130.0 | 56.0 |
| 04 | 162.0 | 65.0 | 204.0 | 69.0 |
| 05 | 253.0 | 30.0 | 183.0 | 34.0 |
| 06 | 72.0 | 1.0 | 419.0 | 8.0 |
| 07 | 9.0 | 5.0 | 486.0 | 0.0 |
| 08 | 430.0 | 67.0 | 0.0 | 3.0 |
| 09 | 4.0 | 0.0 | 3.0 | 493.0 |
| 10 | 15.0 | 7.0 | 4.0 | 474.0 |
| 11 | 429.0 | 1.0 | 11.0 | 59.0 |
| 12 | 226.0 | 35.0 | 130.0 | 109.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.008 | -0.516 | -0.392 | 0.551 |
| 02 | 0.608 | -0.543 | 0.039 | -0.613 |
| 03 | 0.741 | -0.898 | 0.039 | -0.788 |
| 04 | 0.256 | -0.643 | 0.485 | -0.584 |
| 05 | 0.699 | -1.389 | 0.377 | -1.27 |
| 06 | -0.543 | -3.903 | 1.201 | -2.584 |
| 07 | -2.484 | -2.961 | 1.349 | -4.4 |
| 08 | 1.227 | -0.613 | -4.4 | -3.325 |
| 09 | -3.126 | -4.4 | -3.325 | 1.363 |
| 10 | -2.034 | -2.694 | -3.126 | 1.324 |
| 11 | 1.224 | -3.903 | -2.311 | -0.737 |
| 12 | 0.587 | -1.242 | 0.039 | -0.135 |