Model info
| Transcription factor | Ovol1 | ||||||||
| Model | OVOL1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KGTAACKGT | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 7 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | OVOL-factors {2.3.3.17} | ||||||||
| MGI | MGI:1330290 | ||||||||
| EntrezGene | GeneID:18426 (SSTAR profile) | ||||||||
| UniProt ID | OVOL1_MOUSE | ||||||||
| UniProt AC | Q9WTJ2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ovol1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 1.0 | 2.0 | 4.0 |
| 02 | 1.0 | 0.0 | 6.0 | 0.0 |
| 03 | 0.0 | 0.0 | 1.0 | 6.0 |
| 04 | 7.0 | 0.0 | 0.0 | 0.0 |
| 05 | 6.0 | 1.0 | 0.0 | 0.0 |
| 06 | 1.0 | 6.0 | 0.0 | 0.0 |
| 07 | 1.0 | 0.0 | 2.0 | 4.0 |
| 08 | 1.0 | 0.0 | 6.0 | 0.0 |
| 09 | 2.0 | 0.0 | 0.0 | 5.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.525 | -0.408 | 0.106 | 0.696 |
| 02 | -0.408 | -1.525 | 1.065 | -1.525 |
| 03 | -1.525 | -1.525 | -0.408 | 1.065 |
| 04 | 1.208 | -1.525 | -1.525 | -1.525 |
| 05 | 1.065 | -0.408 | -1.525 | -1.525 |
| 06 | -0.408 | 1.065 | -1.525 | -1.525 |
| 07 | -0.408 | -1.525 | 0.106 | 0.696 |
| 08 | -0.408 | -1.525 | 1.065 | -1.525 |
| 09 | 0.106 | -1.525 | -1.525 | 0.897 |