OVOL2_HUMAN.H11DI.0.D motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v13

Model info

Transcription factor

OVOL2
(GeneCards)

Model

OVOL2_HUMAN.H11DI.0.D

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

11

Quality

D

Motif rank

0

Consensus

ndndTAACGGd

Best auROC (human)

0.454

Best auROC (mouse)

0.963

Peak sets in benchmark (human)

2

Peak sets in benchmark (mouse)

2

Aligned words

185

TF family

More than 3 adjacent zinc finger factors {2.3.3}

TF subfamily

OVOL-factors {2.3.3.17}

HGNC

EntrezGene

GeneID:58495
(SSTAR profile)

UniProt ID

UniProt AC

Q9BRP0
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.64525
0.0005	4.900309999999999
0.0001	7.386395

GTEx tissue expression atlas

OVOL2 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	27.0	4.0	5.0	7.0	23.0	5.0	14.0	4.0	30.0	5.0	13.0	5.0	14.0	4.0	14.0	11.0
02	29.0	29.0	25.0	11.0	5.0	6.0	0.0	7.0	19.0	9.0	11.0	7.0	3.0	10.0	1.0	13.0
03	31.0	4.0	18.0	3.0	18.0	13.0	6.0	17.0	15.0	6.0	8.0	8.0	16.0	7.0	11.0	4.0
04	0.0	0.0	0.0	80.0	0.0	0.0	0.0	30.0	0.0	0.0	0.0	43.0	0.0	0.0	0.0	32.0
05	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	185.0	0.0	0.0	0.0
06	180.0	0.0	5.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
07	0.0	180.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	5.0	0.0	0.0	0.0	0.0	0.0	0.0
08	0.0	0.0	0.0	0.0	0.0	0.0	185.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
09	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	185.0	0.0	0.0	0.0	0.0	0.0
10	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	67.0	10.0	39.0	69.0	0.0	0.0	0.0	0.0

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.832	-1.011	-0.803	-0.484	0.674	-0.803	0.187	-1.011	0.936	-0.803	0.114	-0.803	0.187	-1.011	0.187	-0.048
02	0.903	0.903	0.756	-0.048	-0.803	-0.631	-3.596	-0.484	0.486	-0.243	-0.048	-0.484	-1.274	-0.141	-2.193	0.114
03	0.969	-1.011	0.433	-1.274	0.433	0.114	-0.631	0.377	0.254	-0.631	-0.356	-0.356	0.317	-0.484	-0.048	-1.011
04	-3.596	-3.596	-3.596	1.911	-3.596	-3.596	-3.596	0.936	-3.596	-3.596	-3.596	1.293	-3.596	-3.596	-3.596	1.0
05	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	2.747	-3.596	-3.596	-3.596
06	2.719	-3.596	-0.803	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596
07	-3.596	2.719	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-0.803	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596
08	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	2.747	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596
09	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	2.747	-3.596	-3.596	-3.596	-3.596	-3.596
10	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	-3.596	1.734	-0.141	1.196	1.763	-3.596	-3.596	-3.596	-3.596