We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOVOL2
(GeneCards)
ModelOVOL2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
D
Motif rank
0
ConsensusdTAACGGd
Best auROC (human)0.453
Best auROC (mouse)0.952
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words197
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyOVOL-factors {2.3.3.17}
HGNCHGNC:15804
EntrezGeneGeneID:58495
(SSTAR profile)
UniProt IDOVOL2_HUMAN
UniProt ACQ9BRP0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.247485
0.0005 3.45179
0.0001 4.0172799999999995
GTEx tissue expression atlas OVOL2 expression
ReMap ChIP-seq dataset list OVOL2 datasets
Motifs in JASPAR
PCM
ACGT
0182.034.043.038.0
020.00.00.0197.0
03197.00.00.00.0
04189.00.08.00.0
050.0197.00.00.0
060.00.0197.00.0
070.00.0197.00.0
0872.015.041.069.0
PWM
ACGT
010.499-0.359-0.132-0.252
02-3.645-3.645-3.6451.367
031.367-3.645-3.645-3.645
041.325-3.645-1.691-3.645
05-3.6451.367-3.645-3.645
06-3.645-3.6451.367-3.645
07-3.645-3.6451.367-3.645
080.371-1.131-0.1780.33