Model info
| Transcription factor | OVOL2 (GeneCards) | ||||||||
| Model | OVOL2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dTAACGGd | ||||||||
| Best auROC (human) | 0.453 | ||||||||
| Best auROC (mouse) | 0.952 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 197 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | OVOL-factors {2.3.3.17} | ||||||||
| HGNC | HGNC:15804 | ||||||||
| EntrezGene | GeneID:58495 (SSTAR profile) | ||||||||
| UniProt ID | OVOL2_HUMAN | ||||||||
| UniProt AC | Q9BRP0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | OVOL2 expression | ||||||||
| ReMap ChIP-seq dataset list | OVOL2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 82.0 | 34.0 | 43.0 | 38.0 |
| 02 | 0.0 | 0.0 | 0.0 | 197.0 |
| 03 | 197.0 | 0.0 | 0.0 | 0.0 |
| 04 | 189.0 | 0.0 | 8.0 | 0.0 |
| 05 | 0.0 | 197.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 197.0 | 0.0 |
| 07 | 0.0 | 0.0 | 197.0 | 0.0 |
| 08 | 72.0 | 15.0 | 41.0 | 69.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.499 | -0.359 | -0.132 | -0.252 |
| 02 | -3.645 | -3.645 | -3.645 | 1.367 |
| 03 | 1.367 | -3.645 | -3.645 | -3.645 |
| 04 | 1.325 | -3.645 | -1.691 | -3.645 |
| 05 | -3.645 | 1.367 | -3.645 | -3.645 |
| 06 | -3.645 | -3.645 | 1.367 | -3.645 |
| 07 | -3.645 | -3.645 | 1.367 | -3.645 |
| 08 | 0.371 | -1.131 | -0.178 | 0.33 |