We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOvol2
ModelOVOL2_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusndndTAACGGd
Best auROC (human)0.454
Best auROC (mouse)0.963
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words185
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyOVOL-factors {2.3.3.17}
MGIMGI:1338039
EntrezGeneGeneID:107586
(SSTAR profile)
UniProt IDOVOL2_MOUSE
UniProt ACQ8CIV7
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.482965
0.0005 4.67459
0.0001 7.03501
GTEx tissue expression atlas Ovol2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.04.05.07.023.05.014.04.030.05.013.05.014.04.014.011.0
0229.029.025.011.05.06.00.07.019.09.011.07.03.010.01.013.0
0331.04.018.03.018.013.06.017.015.06.08.08.016.07.011.04.0
040.00.00.080.00.00.00.030.00.00.00.043.00.00.00.032.0
050.00.00.00.00.00.00.00.00.00.00.00.0185.00.00.00.0
06180.00.05.00.00.00.00.00.00.00.00.00.00.00.00.00.0
070.0180.00.00.00.00.00.00.00.05.00.00.00.00.00.00.0
080.00.00.00.00.00.0185.00.00.00.00.00.00.00.00.00.0
090.00.00.00.00.00.00.00.00.00.0185.00.00.00.00.00.0
100.00.00.00.00.00.00.00.067.010.039.069.00.00.00.00.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.832-1.011-0.803-0.4840.674-0.8030.187-1.0110.936-0.8030.114-0.8030.187-1.0110.187-0.048
020.9030.9030.756-0.048-0.803-0.631-3.596-0.4840.486-0.243-0.048-0.484-1.274-0.141-2.1930.114
030.969-1.0110.433-1.2740.4330.114-0.6310.3770.254-0.631-0.356-0.3560.317-0.484-0.048-1.011
04-3.596-3.596-3.5961.911-3.596-3.596-3.5960.936-3.596-3.596-3.5961.293-3.596-3.596-3.5961.0
05-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.5962.747-3.596-3.596-3.596
062.719-3.596-0.803-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596
07-3.5962.719-3.596-3.596-3.596-3.596-3.596-3.596-3.596-0.803-3.596-3.596-3.596-3.596-3.596-3.596
08-3.596-3.596-3.596-3.596-3.596-3.5962.747-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596
09-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.5962.747-3.596-3.596-3.596-3.596-3.596
10-3.596-3.596-3.596-3.596-3.596-3.596-3.596-3.5961.734-0.1411.1961.763-3.596-3.596-3.596-3.596