We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTP53
(GeneCards)
ModelP53_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusnndRRCAKGbMSMRACAWGbMbn
Best auROC (human)0.997
Best auROC (mouse)0.988
Peak sets in benchmark (human)141
Peak sets in benchmark (mouse)39
Aligned words598
TF familyp53-related factors {6.3.1}
TF subfamilyp53 {6.3.1.0.1}
HGNCHGNC:11998
EntrezGeneGeneID:7157
(SSTAR profile)
UniProt IDP53_HUMAN
UniProt ACP04637
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.45641
0.0005 5.8461099999999995
0.0001 10.95046
GTEx tissue expression atlas TP53 expression
ReMap ChIP-seq dataset list TP53 datasets
Motifs in JASPAR
MA0106.1 (TP53; Homo sapiens)
MA0106.2 (TP53; Homo sapiens)
MA0106.3 (TP53; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0117.068.065.015.018.041.02.032.022.036.047.040.014.021.039.012.0
0218.08.038.07.0114.09.017.026.069.07.034.043.024.02.064.09.0
0324.09.0175.017.015.01.02.08.030.03.0110.010.08.01.061.015.0
0464.01.09.03.012.00.02.00.0193.04.0139.012.029.01.011.09.0
050.0246.047.05.00.05.00.01.00.0160.00.01.00.020.02.02.0
060.00.00.00.0349.016.014.052.047.01.00.01.01.04.03.01.0
0737.011.075.0274.01.01.00.019.02.00.03.012.011.01.01.041.0
080.00.050.01.06.00.07.00.063.00.016.00.01.00.0344.01.0
091.09.059.01.00.00.00.00.021.0223.01.0172.00.00.00.02.0
106.09.05.02.027.0180.05.020.058.02.00.00.019.095.023.038.0
112.056.049.03.09.0257.03.017.03.027.02.01.01.042.09.08.0
127.01.06.01.0252.059.032.039.058.01.01.03.026.01.00.02.0
1345.017.0273.08.051.04.03.04.04.00.033.02.04.02.035.04.0
1485.01.016.02.023.00.00.00.0236.00.0107.01.08.00.05.05.0
152.0335.013.02.00.01.00.00.05.0122.01.00.00.07.01.00.0
160.07.00.00.0395.012.08.050.013.01.00.01.01.00.01.00.0
1756.027.058.0268.07.02.00.011.02.02.01.04.015.01.01.034.0
1810.02.056.012.016.03.013.00.056.00.03.01.04.03.0309.01.0
193.015.060.08.02.05.01.00.020.0207.011.0143.00.00.010.04.0
207.012.01.05.043.0165.02.017.058.019.01.04.017.082.07.049.0
215.043.066.011.025.0154.06.093.00.011.00.00.02.044.011.018.0
226.013.09.04.0110.057.030.055.054.013.012.04.017.020.051.034.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.5770.7930.748-0.699-0.5210.291-2.5620.045-0.3240.1620.4260.266-0.766-0.370.241-0.916
02-0.521-1.3060.215-1.4331.307-1.193-0.577-0.1590.807-1.4330.1050.338-0.238-2.5620.733-1.193
03-0.238-1.1931.735-0.577-0.699-3.105-2.562-1.306-0.018-2.2121.272-1.092-1.306-3.1050.685-0.699
040.733-3.105-1.193-2.212-0.916-4.382-2.562-4.3821.832-1.9541.505-0.916-0.052-3.105-1.0-1.193
05-4.3822.0750.426-1.748-4.382-1.748-4.382-3.105-4.3821.645-4.382-3.105-4.382-0.417-2.562-2.562
06-4.382-4.382-4.382-4.3822.424-0.636-0.7660.5260.426-3.105-4.382-3.105-3.105-1.954-2.212-3.105
070.189-1.00.892.182-3.105-3.105-4.382-0.468-2.562-4.382-2.212-0.916-1.0-3.105-3.1050.291
08-4.382-4.3820.487-3.105-1.578-4.382-1.433-4.3820.717-4.382-0.636-4.382-3.105-4.3822.409-3.105
09-3.105-1.1930.652-3.105-4.382-4.382-4.382-4.382-0.371.977-3.1051.717-4.382-4.382-4.382-2.562
10-1.578-1.193-1.748-2.562-0.1221.763-1.748-0.4170.635-2.562-4.382-4.382-0.4681.126-0.280.215
11-2.5620.60.467-2.212-1.1932.118-2.212-0.577-2.212-0.122-2.562-3.105-3.1050.314-1.193-1.306
12-1.433-3.105-1.578-3.1052.0990.6520.0450.2410.635-3.105-3.105-2.212-0.159-3.105-4.382-2.562
130.383-0.5772.179-1.3060.507-1.954-2.212-1.954-1.954-4.3820.076-2.562-1.954-2.5620.134-1.954
141.015-3.105-0.636-2.562-0.28-4.382-4.382-4.3822.033-4.3821.244-3.105-1.306-4.382-1.748-1.748
15-2.5622.383-0.838-2.562-4.382-3.105-4.382-4.382-1.7481.375-3.105-4.382-4.382-1.433-3.105-4.382
16-4.382-1.433-4.382-4.3822.548-0.916-1.3060.487-0.838-3.105-4.382-3.105-3.105-4.382-3.105-4.382
170.6-0.1220.6352.16-1.433-2.562-4.382-1.0-2.562-2.562-3.105-1.954-0.699-3.105-3.1050.105
18-1.092-2.5620.6-0.916-0.636-2.212-0.838-4.3820.6-4.382-2.212-3.105-1.954-2.2122.302-3.105
19-2.212-0.6990.668-1.306-2.562-1.748-3.105-4.382-0.4171.902-1.01.533-4.382-4.382-1.092-1.954
20-1.433-0.916-3.105-1.7480.3381.676-2.562-0.5770.635-0.468-3.105-1.954-0.5770.979-1.4330.467
21-1.7480.3380.763-1.0-0.1981.607-1.5781.104-4.382-1.0-4.382-4.382-2.5620.361-1.0-0.521
22-1.578-0.838-1.193-1.9541.2720.617-0.0180.5820.564-0.838-0.916-1.954-0.577-0.4170.5070.105