Model info
| Transcription factor | TP53 (GeneCards) | ||||||||
| Model | P53_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRRCWWGYYCWRRCATGYYh | ||||||||
| Best auROC (human) | 0.995 | ||||||||
| Best auROC (mouse) | 0.979 | ||||||||
| Peak sets in benchmark (human) | 141 | ||||||||
| Peak sets in benchmark (mouse) | 39 | ||||||||
| Aligned words | 487 | ||||||||
| TF family | p53-related factors {6.3.1} | ||||||||
| TF subfamily | p53 {6.3.1.0.1} | ||||||||
| HGNC | HGNC:11998 | ||||||||
| EntrezGene | GeneID:7157 (SSTAR profile) | ||||||||
| UniProt ID | P53_HUMAN | ||||||||
| UniProt AC | P04637 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TP53 expression | ||||||||
| ReMap ChIP-seq dataset list | TP53 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 179.0 | 41.0 | 174.0 | 92.0 |
| 02 | 89.0 | 19.0 | 324.0 | 54.0 |
| 03 | 254.0 | 23.0 | 184.0 | 25.0 |
| 04 | 3.0 | 440.0 | 10.0 | 33.0 |
| 05 | 334.0 | 28.0 | 16.0 | 108.0 |
| 06 | 105.0 | 3.0 | 23.0 | 355.0 |
| 07 | 3.0 | 1.0 | 475.0 | 7.0 |
| 08 | 24.0 | 251.0 | 4.0 | 207.0 |
| 09 | 53.0 | 327.0 | 17.0 | 89.0 |
| 10 | 11.0 | 399.0 | 41.0 | 35.0 |
| 11 | 351.0 | 54.0 | 19.0 | 62.0 |
| 12 | 81.0 | 21.0 | 365.0 | 19.0 |
| 13 | 306.0 | 3.0 | 165.0 | 12.0 |
| 14 | 0.0 | 481.0 | 4.0 | 1.0 |
| 15 | 385.0 | 21.0 | 3.0 | 77.0 |
| 16 | 58.0 | 25.0 | 15.0 | 388.0 |
| 17 | 20.0 | 9.0 | 453.0 | 4.0 |
| 18 | 29.0 | 228.0 | 15.0 | 214.0 |
| 19 | 57.0 | 304.0 | 19.0 | 106.0 |
| 20 | 47.0 | 258.0 | 32.0 | 149.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.383 | -1.062 | 0.355 | -0.274 |
| 02 | -0.307 | -1.79 | 0.973 | -0.795 |
| 03 | 0.731 | -1.612 | 0.411 | -1.534 |
| 04 | -3.298 | 1.278 | -2.366 | -1.27 |
| 05 | 1.003 | -1.427 | -1.948 | -0.116 |
| 06 | -0.144 | -3.298 | -1.612 | 1.064 |
| 07 | -3.298 | -3.878 | 1.354 | -2.667 |
| 08 | -1.572 | 0.719 | -3.099 | 0.528 |
| 09 | -0.814 | 0.982 | -1.892 | -0.307 |
| 10 | -2.283 | 1.18 | -1.062 | -1.214 |
| 11 | 1.053 | -0.795 | -1.79 | -0.661 |
| 12 | -0.399 | -1.697 | 1.092 | -1.79 |
| 13 | 0.916 | -3.298 | 0.303 | -2.206 |
| 14 | -4.377 | 1.367 | -3.099 | -3.878 |
| 15 | 1.145 | -1.697 | -3.298 | -0.449 |
| 16 | -0.726 | -1.534 | -2.006 | 1.152 |
| 17 | -1.742 | -2.457 | 1.307 | -3.099 |
| 18 | -1.393 | 0.624 | -2.006 | 0.561 |
| 19 | -0.743 | 0.91 | -1.79 | -0.135 |
| 20 | -0.93 | 0.746 | -1.3 | 0.202 |