We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTp53
ModelP53_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusRRRCAWGYMYRGRCWdRhMh
Best auROC (human)0.995
Best auROC (mouse)0.988
Peak sets in benchmark (human)141
Peak sets in benchmark (mouse)39
Aligned words498
TF familyp53-related factors {6.3.1}
TF subfamilyp53 {6.3.1.0.1}
MGIMGI:98834
EntrezGeneGeneID:22059
(SSTAR profile)
UniProt IDP53_MOUSE
UniProt ACP02340
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.33491
0.0005 3.5172099999999995
0.0001 6.01926
GTEx tissue expression atlas Tp53 expression
Motifs in JASPAR
MA0106.1 (TP53; Homo sapiens)
MA0106.2 (TP53; Homo sapiens)
MA0106.3 (TP53; Homo sapiens)
PCM
ACGT
01170.030.0284.014.0
02117.013.0339.029.0
03335.03.0150.010.0
0426.0464.05.03.0
05464.02.011.021.0
06122.012.015.0349.0
079.08.0475.06.0
0811.0329.06.0152.0
0953.0390.011.044.0
1041.0341.033.083.0
11244.09.0225.020.0
1238.040.0410.010.0
13127.07.0325.039.0
147.0459.027.05.0
15386.033.010.069.0
16152.017.0139.0190.0
1745.038.0397.018.0
1863.0250.058.0127.0
1988.0308.041.061.0
2084.0281.051.082.0
PWM
ACGT
010.308-1.3850.818-2.092
02-0.061-2.1590.994-1.417
030.982-3.3210.184-2.39
04-1.5211.307-2.957-3.321
051.307-3.569-2.307-1.721
06-0.02-2.23-2.031.023
07-2.48-2.581.33-2.815
08-2.3070.964-2.8150.197
09-0.8381.133-2.307-1.018
10-1.0861.0-1.294-0.399
110.667-2.480.586-1.766
12-1.159-1.111.183-2.39
130.02-2.690.952-1.134
14-2.691.296-1.485-2.957
151.123-1.294-2.39-0.58
160.197-1.9160.1090.418
17-0.996-1.1591.151-1.864
18-0.6690.691-0.750.02
19-0.3420.898-1.086-0.701
20-0.3880.807-0.875-0.411