Model info
| Transcription factor | Tp53 | ||||||||
| Model | P53_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRRCAWGYMYRGRCWdRhMh | ||||||||
| Best auROC (human) | 0.995 | ||||||||
| Best auROC (mouse) | 0.988 | ||||||||
| Peak sets in benchmark (human) | 141 | ||||||||
| Peak sets in benchmark (mouse) | 39 | ||||||||
| Aligned words | 498 | ||||||||
| TF family | p53-related factors {6.3.1} | ||||||||
| TF subfamily | p53 {6.3.1.0.1} | ||||||||
| MGI | MGI:98834 | ||||||||
| EntrezGene | GeneID:22059 (SSTAR profile) | ||||||||
| UniProt ID | P53_MOUSE | ||||||||
| UniProt AC | P02340 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tp53 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 170.0 | 30.0 | 284.0 | 14.0 |
| 02 | 117.0 | 13.0 | 339.0 | 29.0 |
| 03 | 335.0 | 3.0 | 150.0 | 10.0 |
| 04 | 26.0 | 464.0 | 5.0 | 3.0 |
| 05 | 464.0 | 2.0 | 11.0 | 21.0 |
| 06 | 122.0 | 12.0 | 15.0 | 349.0 |
| 07 | 9.0 | 8.0 | 475.0 | 6.0 |
| 08 | 11.0 | 329.0 | 6.0 | 152.0 |
| 09 | 53.0 | 390.0 | 11.0 | 44.0 |
| 10 | 41.0 | 341.0 | 33.0 | 83.0 |
| 11 | 244.0 | 9.0 | 225.0 | 20.0 |
| 12 | 38.0 | 40.0 | 410.0 | 10.0 |
| 13 | 127.0 | 7.0 | 325.0 | 39.0 |
| 14 | 7.0 | 459.0 | 27.0 | 5.0 |
| 15 | 386.0 | 33.0 | 10.0 | 69.0 |
| 16 | 152.0 | 17.0 | 139.0 | 190.0 |
| 17 | 45.0 | 38.0 | 397.0 | 18.0 |
| 18 | 63.0 | 250.0 | 58.0 | 127.0 |
| 19 | 88.0 | 308.0 | 41.0 | 61.0 |
| 20 | 84.0 | 281.0 | 51.0 | 82.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.308 | -1.385 | 0.818 | -2.092 |
| 02 | -0.061 | -2.159 | 0.994 | -1.417 |
| 03 | 0.982 | -3.321 | 0.184 | -2.39 |
| 04 | -1.521 | 1.307 | -2.957 | -3.321 |
| 05 | 1.307 | -3.569 | -2.307 | -1.721 |
| 06 | -0.02 | -2.23 | -2.03 | 1.023 |
| 07 | -2.48 | -2.58 | 1.33 | -2.815 |
| 08 | -2.307 | 0.964 | -2.815 | 0.197 |
| 09 | -0.838 | 1.133 | -2.307 | -1.018 |
| 10 | -1.086 | 1.0 | -1.294 | -0.399 |
| 11 | 0.667 | -2.48 | 0.586 | -1.766 |
| 12 | -1.159 | -1.11 | 1.183 | -2.39 |
| 13 | 0.02 | -2.69 | 0.952 | -1.134 |
| 14 | -2.69 | 1.296 | -1.485 | -2.957 |
| 15 | 1.123 | -1.294 | -2.39 | -0.58 |
| 16 | 0.197 | -1.916 | 0.109 | 0.418 |
| 17 | -0.996 | -1.159 | 1.151 | -1.864 |
| 18 | -0.669 | 0.691 | -0.75 | 0.02 |
| 19 | -0.342 | 0.898 | -1.086 | -0.701 |
| 20 | -0.388 | 0.807 | -0.875 | -0.411 |