Transcription factor | Tp53 | ||||||||
Model | P53_MOUSE.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | dRRCAWGYCYRGR | ||||||||
Best auROC (human) | 0.987 | ||||||||
Best auROC (mouse) | 0.981 | ||||||||
Peak sets in benchmark (human) | 141 | ||||||||
Peak sets in benchmark (mouse) | 39 | ||||||||
Aligned words | 504 | ||||||||
TF family | p53-related factors {6.3.1} | ||||||||
TF subfamily | p53 {6.3.1.0.1} | ||||||||
MGI | MGI:98834 | ||||||||
EntrezGene | GeneID:22059 (SSTAR profile) | ||||||||
UniProt ID | P53_MOUSE | ||||||||
UniProt AC | P02340 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Tp53 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 163.0 | 23.0 | 254.0 | 60.0 |
02 | 112.0 | 13.0 | 343.0 | 32.0 |
03 | 278.0 | 1.0 | 203.0 | 18.0 |
04 | 0.0 | 495.0 | 3.0 | 2.0 |
05 | 441.0 | 1.0 | 6.0 | 52.0 |
06 | 124.0 | 0.0 | 17.0 | 359.0 |
07 | 0.0 | 0.0 | 500.0 | 0.0 |
08 | 12.0 | 307.0 | 2.0 | 179.0 |
09 | 14.0 | 418.0 | 14.0 | 54.0 |
10 | 56.0 | 249.0 | 21.0 | 174.0 |
11 | 181.0 | 12.0 | 263.0 | 44.0 |
12 | 41.0 | 11.0 | 415.0 | 33.0 |
13 | 129.0 | 9.0 | 347.0 | 15.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.263 | -1.64 | 0.703 | -0.721 |
02 | -0.108 | -2.163 | 1.002 | -1.328 |
03 | 0.793 | -3.903 | 0.48 | -1.868 |
04 | -4.4 | 1.367 | -3.325 | -3.573 |
05 | 1.252 | -3.903 | -2.819 | -0.86 |
06 | -0.008 | -4.4 | -1.92 | 1.047 |
07 | -4.4 | -4.4 | 1.377 | -4.4 |
08 | -2.234 | 0.891 | -3.573 | 0.355 |
09 | -2.096 | 1.199 | -2.096 | -0.823 |
10 | -0.788 | 0.683 | -1.725 | 0.327 |
11 | 0.366 | -2.234 | 0.737 | -1.022 |
12 | -1.09 | -2.311 | 1.191 | -1.298 |
13 | 0.031 | -2.484 | 1.013 | -2.034 |