Model info
| Transcription factor | POU5F1B (GeneCards) | ||||||||
| Model | P5F1B_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvWTTTGCATAWKYWd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 664 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU5 (Oct-3/4-like factors) {3.1.10.5} | ||||||||
| HGNC | HGNC:9223 | ||||||||
| EntrezGene | GeneID:5462 (SSTAR profile) | ||||||||
| UniProt ID | P5F1B_HUMAN | ||||||||
| UniProt AC | Q06416 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | POU5F1B expression | ||||||||
| ReMap ChIP-seq dataset list | POU5F1B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 167.75 | 103.75 | 131.75 | 260.75 |
| 02 | 290.75 | 162.75 | 118.75 | 91.75 |
| 03 | 527.0 | 34.0 | 20.0 | 83.0 |
| 04 | 21.0 | 49.0 | 16.0 | 578.0 |
| 05 | 105.5 | 9.5 | 5.5 | 543.5 |
| 06 | 102.25 | 2.25 | 3.25 | 556.25 |
| 07 | 44.75 | 2.75 | 612.75 | 3.75 |
| 08 | 75.25 | 586.25 | 2.25 | 0.25 |
| 09 | 658.0 | 1.0 | 3.0 | 2.0 |
| 10 | 15.0 | 5.0 | 1.0 | 643.0 |
| 11 | 626.75 | 5.75 | 23.75 | 7.75 |
| 12 | 94.5 | 57.5 | 11.5 | 500.5 |
| 13 | 89.5 | 32.5 | 171.5 | 370.5 |
| 14 | 64.75 | 375.75 | 25.75 | 197.75 |
| 15 | 440.0 | 35.0 | 44.0 | 145.0 |
| 16 | 196.5 | 59.5 | 68.5 | 339.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.01 | -0.464 | -0.229 | 0.448 |
| 02 | 0.556 | -0.02 | -0.331 | -0.585 |
| 03 | 1.149 | -1.549 | -2.048 | -0.684 |
| 04 | -2.003 | -1.197 | -2.252 | 1.241 |
| 05 | -0.448 | -2.713 | -3.158 | 1.179 |
| 06 | -0.479 | -3.767 | -3.538 | 1.202 |
| 07 | -1.285 | -3.646 | 1.299 | -3.44 |
| 08 | -0.78 | 1.255 | -3.767 | -4.493 |
| 09 | 1.37 | -4.157 | -3.59 | -3.834 |
| 10 | -2.311 | -3.231 | -4.157 | 1.347 |
| 11 | 1.321 | -3.124 | -1.888 | -2.884 |
| 12 | -0.556 | -1.042 | -2.547 | 1.097 |
| 13 | -0.609 | -1.592 | 0.032 | 0.798 |
| 14 | -0.926 | 0.812 | -1.812 | 0.173 |
| 15 | 0.969 | -1.521 | -1.301 | -0.134 |
| 16 | 0.167 | -1.009 | -0.871 | 0.711 |