Model info
| Transcription factor | PATZ1 (GeneCards) | ||||||||
| Model | PATZ1_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 22 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dKRGvRRRGRMKSvRvndRvRb | ||||||||
| Best auROC (human) | 0.917 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 498 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | MAZ-like factors {2.3.4.8} | ||||||||
| HGNC | HGNC:13071 | ||||||||
| EntrezGene | GeneID:23598 (SSTAR profile) | ||||||||
| UniProt ID | PATZ1_HUMAN | ||||||||
| UniProt AC | Q9HBE1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PATZ1 expression | ||||||||
| ReMap ChIP-seq dataset list | PATZ1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 115.0 | 45.0 | 275.0 | 56.0 |
| 02 | 67.0 | 13.0 | 314.0 | 97.0 |
| 03 | 70.0 | 41.0 | 335.0 | 45.0 |
| 04 | 20.0 | 42.0 | 413.0 | 16.0 |
| 05 | 225.0 | 141.0 | 67.0 | 58.0 |
| 06 | 120.0 | 30.0 | 306.0 | 35.0 |
| 07 | 70.0 | 15.0 | 347.0 | 59.0 |
| 08 | 106.0 | 32.0 | 340.0 | 13.0 |
| 09 | 62.0 | 8.0 | 416.0 | 5.0 |
| 10 | 104.0 | 58.0 | 302.0 | 27.0 |
| 11 | 205.0 | 274.0 | 4.0 | 8.0 |
| 12 | 39.0 | 14.0 | 272.0 | 166.0 |
| 13 | 14.0 | 70.0 | 376.0 | 31.0 |
| 14 | 79.0 | 79.0 | 298.0 | 35.0 |
| 15 | 161.0 | 31.0 | 284.0 | 15.0 |
| 16 | 143.0 | 94.0 | 243.0 | 11.0 |
| 17 | 118.0 | 118.0 | 171.0 | 84.0 |
| 18 | 78.0 | 37.0 | 283.0 | 93.0 |
| 19 | 63.0 | 28.0 | 380.0 | 20.0 |
| 20 | 203.0 | 107.0 | 154.0 | 27.0 |
| 21 | 156.0 | 7.0 | 306.0 | 22.0 |
| 22 | 68.0 | 100.0 | 240.0 | 83.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.064 | -0.982 | 0.8 | -0.77 |
| 02 | -0.595 | -2.145 | 0.932 | -0.232 |
| 03 | -0.552 | -1.072 | 0.996 | -0.982 |
| 04 | -1.752 | -1.049 | 1.205 | -1.958 |
| 05 | 0.6 | 0.137 | -0.595 | -0.736 |
| 06 | -0.022 | -1.371 | 0.906 | -1.224 |
| 07 | -0.552 | -2.016 | 1.031 | -0.719 |
| 08 | -0.145 | -1.31 | 1.011 | -2.145 |
| 09 | -0.671 | -2.566 | 1.212 | -2.943 |
| 10 | -0.164 | -0.736 | 0.893 | -1.471 |
| 11 | 0.508 | 0.796 | -3.109 | -2.566 |
| 12 | -1.12 | -2.079 | 0.789 | 0.299 |
| 13 | -2.079 | -0.552 | 1.111 | -1.34 |
| 14 | -0.434 | -0.434 | 0.88 | -1.224 |
| 15 | 0.268 | -1.34 | 0.832 | -2.016 |
| 16 | 0.151 | -0.263 | 0.677 | -2.293 |
| 17 | -0.039 | -0.039 | 0.328 | -0.374 |
| 18 | -0.446 | -1.171 | 0.828 | -0.274 |
| 19 | -0.655 | -1.437 | 1.122 | -1.752 |
| 20 | 0.498 | -0.135 | 0.224 | -1.471 |
| 21 | 0.237 | -2.677 | 0.906 | -1.664 |
| 22 | -0.581 | -0.202 | 0.664 | -0.385 |