We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPATZ1
(GeneCards)
ModelPATZ1_HUMAN.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
1
ConsensusdGGGAGRRG
Best auROC (human)0.859
Best auROC (mouse)
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)
Aligned words499
TF familyFactors with multiple dispersed zinc fingers {2.3.4}
TF subfamilyMAZ-like factors {2.3.4.8}
HGNCHGNC:13071
EntrezGeneGeneID:23598
(SSTAR profile)
UniProt IDPATZ1_HUMAN
UniProt ACQ9HBE1
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.072905
0.0005 5.986935
0.0001 7.515145
GTEx tissue expression atlas PATZ1 expression
ReMap ChIP-seq dataset list PATZ1 datasets
Motifs in JASPAR
PCM
ACGT
01253.062.0114.067.0
0229.06.0406.055.0
0311.08.0461.016.0
0412.014.0467.03.0
05481.04.00.011.0
06111.01.0374.010.0
0797.02.0350.047.0
08137.09.0312.038.0
0965.012.0402.017.0
PWM
ACGT
010.707-0.681-0.083-0.605
02-1.413-2.8111.177-0.798
03-2.303-2.5761.304-1.968
04-2.226-2.0891.317-3.317
051.346-3.119-4.393-2.303
06-0.109-3.8961.096-2.386
07-0.242-3.5651.03-0.95
080.099-2.4760.915-1.155
09-0.635-2.2261.168-1.912