We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPAX1
(GeneCards)
ModelPAX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensushbGTCACGCWTSAnTKv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1173
TF familyPaired domain only {3.2.2}
TF subfamilyPAX-1/9 (no homeo remnant) {3.2.2.1}
HGNCHGNC:8615
EntrezGeneGeneID:5075
(SSTAR profile)
UniProt IDPAX1_HUMAN
UniProt ACP15863
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.7587600000000001
0.0005 2.05961
0.0001 4.77046
GTEx tissue expression atlas PAX1 expression
ReMap ChIP-seq dataset list PAX1 datasets
Motifs in JASPAR
PCM
ACGT
01209.25332.25182.25449.25
0299.5575.5350.5147.5
0341.7540.751039.7550.75
0478.556.534.51003.5
057.0963.01.0202.0
061078.088.04.03.0
072.01010.04.0157.0
085.03.01161.04.0
096.0912.0252.03.0
10436.020.03.0714.0
114.25106.254.251058.25
126.25373.25762.2531.25
13960.01.0207.05.0
14215.5369.5333.5254.5
1520.2575.2513.251064.25
16108.033.0819.0213.0
17442.75374.75272.7582.75
PWM
ACGT
01-0.3350.124-0.4720.424
02-1.0690.6710.177-0.681
03-1.914-1.9371.261-1.726
04-1.302-1.622-2.0961.226
05-3.5161.185-4.669-0.37
061.297-1.19-3.935-4.125
07-4.3611.232-3.935-0.62
08-3.775-4.1251.372-3.935
09-3.6371.131-0.151-4.125
100.395-2.607-4.1250.886
11-3.892-1.005-3.8921.279
12-3.6050.240.952-2.19
131.182-4.669-0.346-3.775
14-0.3060.230.128-0.141
15-2.595-1.343-2.9781.285
16-0.989-2.1381.023-0.317
170.410.244-0.072-1.25