Transcription factor | PAX3 (GeneCards) | ||||||||
Model | PAX3_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | HT-SELEX | ||||||||
Model release | HOCOMOCOv10 | ||||||||
Model length | 13 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | vhTAATCGATTAh | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 5195 | ||||||||
TF family | Paired plus homeo domain {3.2.1} | ||||||||
TF subfamily | PAX-3/7 {3.2.1.1} | ||||||||
HGNC | HGNC:8617 | ||||||||
EntrezGene | GeneID:5077 (SSTAR profile) | ||||||||
UniProt ID | PAX3_HUMAN | ||||||||
UniProt AC | P23760 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | PAX3 expression | ||||||||
ReMap ChIP-seq dataset list | PAX3 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 946.25 | 781.25 | 2741.25 | 594.25 |
02 | 2154.5 | 839.5 | 555.5 | 1513.5 |
03 | 65.0 | 46.0 | 46.0 | 4906.0 |
04 | 5061.25 | 0.25 | 1.25 | 0.25 |
05 | 5063.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 5063.0 |
07 | 0.0 | 2929.0 | 0.0 | 2134.0 |
08 | 1.0 | 0.0 | 5062.0 | 0.0 |
09 | 5061.0 | 0.0 | 2.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 5063.0 |
11 | 0.0 | 0.0 | 0.0 | 5063.0 |
12 | 4815.5 | 43.5 | 45.5 | 158.5 |
13 | 2225.75 | 604.75 | 377.75 | 1854.75 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.29 | -0.481 | 0.772 | -0.754 |
02 | 0.531 | -0.41 | -0.821 | 0.178 |
03 | -2.938 | -3.271 | -3.271 | 1.354 |
04 | 1.385 | -6.277 | -5.927 | -6.277 |
05 | 1.385 | -6.388 | -6.388 | -6.388 |
06 | -6.388 | -6.388 | -6.388 | 1.385 |
07 | -6.388 | 0.838 | -6.388 | 0.522 |
08 | -6.003 | -6.388 | 1.385 | -6.388 |
09 | 1.385 | -6.388 | -5.726 | -6.388 |
10 | -6.388 | -6.388 | -6.388 | 1.385 |
11 | -6.388 | -6.388 | -6.388 | 1.385 |
12 | 1.335 | -3.324 | -3.282 | -2.066 |
13 | 0.564 | -0.737 | -1.205 | 0.382 |