We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPAX3
(GeneCards)
ModelPAX3_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusvhTAATCGATTAh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5195
TF familyPaired plus homeo domain {3.2.1}
TF subfamilyPAX-3/7 {3.2.1.1}
HGNCHGNC:8617
EntrezGeneGeneID:5077
(SSTAR profile)
UniProt IDPAX3_HUMAN
UniProt ACP23760
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -2.71663
0.0005 -0.6746800000000001
0.0001 3.6394399999999996
GTEx tissue expression atlas PAX3 expression
ReMap ChIP-seq dataset list PAX3 datasets
Motifs in JASPAR
PCM
ACGT
01946.25781.252741.25594.25
022154.5839.5555.51513.5
0365.046.046.04906.0
045061.250.251.250.25
055063.00.00.00.0
060.00.00.05063.0
070.02929.00.02134.0
081.00.05062.00.0
095061.00.02.00.0
100.00.00.05063.0
110.00.00.05063.0
124815.543.545.5158.5
132225.75604.75377.751854.75
PWM
ACGT
01-0.29-0.4810.772-0.754
020.531-0.41-0.8210.178
03-2.938-3.271-3.2711.354
041.385-6.277-5.927-6.277
051.385-6.388-6.388-6.388
06-6.388-6.388-6.3881.385
07-6.3880.838-6.3880.522
08-6.003-6.3881.385-6.388
091.385-6.388-5.726-6.388
10-6.388-6.388-6.3881.385
11-6.388-6.388-6.3881.385
121.335-3.324-3.282-2.066
130.564-0.737-1.2050.382