Model info
| Transcription factor | Pax3 | ||||||||
| Model | PAX3_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ndnWMATKGvWKh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.773 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 455 | ||||||||
| TF family | Paired plus homeo domain {3.2.1} | ||||||||
| TF subfamily | PAX-3/7 {3.2.1.1} | ||||||||
| MGI | MGI:97487 | ||||||||
| EntrezGene | GeneID:18505 (SSTAR profile) | ||||||||
| UniProt ID | PAX3_MOUSE | ||||||||
| UniProt AC | P24610 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pax3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 135.0 | 73.0 | 164.0 | 83.0 |
| 02 | 93.0 | 76.0 | 190.0 | 96.0 |
| 03 | 98.0 | 148.0 | 123.0 | 86.0 |
| 04 | 118.0 | 16.0 | 18.0 | 303.0 |
| 05 | 326.0 | 99.0 | 26.0 | 4.0 |
| 06 | 439.0 | 9.0 | 1.0 | 6.0 |
| 07 | 5.0 | 32.0 | 46.0 | 372.0 |
| 08 | 10.0 | 22.0 | 90.0 | 333.0 |
| 09 | 17.0 | 37.0 | 379.0 | 22.0 |
| 10 | 300.0 | 63.0 | 63.0 | 29.0 |
| 11 | 77.0 | 49.0 | 33.0 | 296.0 |
| 12 | 52.0 | 39.0 | 54.0 | 310.0 |
| 13 | 235.0 | 42.0 | 36.0 | 142.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.169 | -0.436 | 0.362 | -0.31 |
| 02 | -0.198 | -0.397 | 0.508 | -0.167 |
| 03 | -0.147 | 0.26 | 0.077 | -0.275 |
| 04 | 0.036 | -1.883 | -1.775 | 0.971 |
| 05 | 1.044 | -0.137 | -1.432 | -3.037 |
| 06 | 1.341 | -2.393 | -3.819 | -2.728 |
| 07 | -2.871 | -1.235 | -0.886 | 1.176 |
| 08 | -2.302 | -1.589 | -0.231 | 1.065 |
| 09 | -1.828 | -1.096 | 1.194 | -1.589 |
| 10 | 0.962 | -0.58 | -0.58 | -1.329 |
| 11 | -0.384 | -0.825 | -1.206 | 0.948 |
| 12 | -0.767 | -1.045 | -0.73 | 0.994 |
| 13 | 0.719 | -0.974 | -1.122 | 0.219 |