Check the newest release v12
Model info
Transcription factorPAX5
(GeneCards)
ModelPAX5_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusnnnvdRvKCRvYvRWGCRWGRMn
Best auROC (human)0.961
Best auROC (mouse)0.899
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)8
Aligned words503
TF familyPaired domain only {3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox) {3.2.2.2}
HGNCHGNC:8619
EntrezGeneGeneID:5079
(SSTAR profile)
UniProt IDPAX5_HUMAN
UniProt ACQ02548
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.54711
0.0005 7.583960000000001
0.0001 11.862960000000001
GTEx tissue expression atlas PAX5 expression
ReMap ChIP-seq dataset list PAX5 datasets
Motifs in JASPAR
MA0014.1 (Pax5; Mus musculus)
MA0014.2 (PAX5; Homo sapiens)
MA0014.3 (PAX5; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.030.092.013.033.029.012.051.017.064.034.014.013.024.037.015.0
0217.025.029.014.045.040.010.052.017.0104.031.023.012.029.034.018.0
0341.08.037.05.047.081.037.033.040.023.029.012.011.017.075.04.0
0461.06.042.030.016.08.08.097.027.014.065.072.05.04.017.028.0
0560.01.046.02.014.02.012.04.061.04.064.03.015.03.0207.02.0
0660.025.053.012.04.01.02.03.064.058.0148.059.01.01.05.04.0
070.040.043.046.01.017.08.059.02.030.0141.035.00.06.055.017.0
080.01.01.01.03.067.02.021.010.0209.02.026.06.0108.02.041.0
0915.00.02.02.0312.010.052.011.00.07.00.00.056.07.020.06.0
1078.064.0196.045.014.01.04.05.036.016.018.04.06.03.07.03.0
116.099.013.016.03.035.01.045.00.0151.012.062.00.036.010.011.0
121.04.03.01.0107.0152.050.012.02.022.012.00.013.046.075.00.0
1312.01.0109.01.0197.05.020.02.061.05.073.01.00.00.012.01.0
14138.08.046.078.04.00.03.04.0144.07.032.031.01.00.02.02.0
151.060.0226.00.02.08.05.00.00.016.066.01.00.021.094.00.0
160.01.01.01.00.084.01.020.02.0315.07.067.00.01.00.00.0
170.00.02.00.0138.010.0246.07.04.00.04.01.02.00.086.00.0
1815.05.016.0108.00.01.01.08.068.09.054.0207.01.00.02.05.0
1917.00.066.01.04.00.010.01.060.02.07.04.027.01.0296.04.0
2076.01.022.09.03.00.00.00.0293.020.049.017.03.01.04.02.0
2159.0303.07.06.07.012.01.02.015.043.04.013.01.022.01.04.0
2226.013.032.011.061.0149.059.0111.03.04.02.04.04.01.09.011.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.346-0.041.072-0.860.054-0.074-0.9380.485-0.5990.7110.083-0.788-0.86-0.260.167-0.721
02-0.599-0.22-0.074-0.7880.3610.244-1.1140.504-0.5991.194-0.008-0.302-0.938-0.0740.083-0.543
030.269-1.3280.167-1.770.4040.9450.1670.0540.244-0.302-0.074-0.938-1.022-0.5990.868-1.975
040.663-1.60.293-0.04-0.658-1.328-1.3281.124-0.144-0.7880.7260.828-1.77-1.975-0.599-0.108
050.646-3.1260.383-2.584-0.788-2.584-0.938-1.9750.663-1.9750.711-2.234-0.721-2.2341.88-2.584
060.646-0.220.523-0.938-1.975-3.126-2.584-2.2340.7110.6131.5450.63-3.126-3.126-1.77-1.975
07-4.40.2440.3160.383-3.126-0.599-1.3280.63-2.584-0.041.4970.112-4.4-1.60.56-0.599
08-4.4-3.126-3.126-3.126-2.2340.756-2.584-0.392-1.1141.89-2.584-0.181-1.61.231-2.5840.269
09-0.721-4.4-2.584-2.5842.29-1.1140.504-1.022-4.4-1.454-4.4-4.40.578-1.454-0.439-1.6
100.9070.7111.8260.361-0.788-3.126-1.975-1.770.14-0.658-0.543-1.975-1.6-2.234-1.454-2.234
11-1.61.145-0.86-0.658-2.2340.112-3.1260.361-4.41.565-0.9380.679-4.40.14-1.114-1.022
12-3.126-1.975-2.234-3.1261.2221.5720.465-0.938-2.584-0.346-0.938-4.4-0.860.3830.868-4.4
13-0.938-3.1261.241-3.1261.831-1.77-0.439-2.5840.663-1.770.841-3.126-4.4-4.4-0.938-3.126
141.476-1.3280.3830.907-1.975-4.4-2.234-1.9751.518-1.4540.023-0.008-3.126-4.4-2.584-2.584
15-3.1260.6461.968-4.4-2.584-1.328-1.77-4.4-4.4-0.6580.741-3.126-4.4-0.3921.093-4.4
16-4.4-3.126-3.126-3.126-4.40.981-3.126-0.439-2.5842.299-1.4540.756-4.4-3.126-4.4-4.4
17-4.4-4.4-2.584-4.41.476-1.1142.053-1.454-1.975-4.4-1.975-3.126-2.584-4.41.004-4.4
18-0.721-1.77-0.6581.231-4.4-3.126-3.126-1.3280.771-1.2150.5421.88-3.126-4.4-2.584-1.77
19-0.599-4.40.741-3.126-1.975-4.4-1.114-3.1260.646-2.584-1.454-1.975-0.144-3.1262.237-1.975
200.881-3.126-0.346-1.215-2.234-4.4-4.4-4.42.227-0.4390.445-0.599-2.234-3.126-1.975-2.584
210.632.261-1.454-1.6-1.454-0.938-3.126-2.584-0.7210.316-1.975-0.86-3.126-0.346-3.126-1.975
22-0.181-0.860.023-1.0220.6631.5520.631.259-2.234-1.975-2.584-1.975-1.975-3.126-1.215-1.022