We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPAX5
(GeneCards)
ModelPAX5_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusnnnvdRvKCRvYvRWGCRWGRMn
Best auROC (human)0.961
Best auROC (mouse)0.899
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)8
Aligned words503
TF familyPaired domain only {3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox) {3.2.2.2}
HGNCHGNC:8619
EntrezGeneGeneID:5079
(SSTAR profile)
UniProt IDPAX5_HUMAN
UniProt ACQ02548
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.54711
0.0005 7.583960000000001
0.0001 11.862960000000001
GTEx tissue expression atlas PAX5 expression
ReMap ChIP-seq dataset list PAX5 datasets
Motifs in JASPAR
MA0014.1 (Pax5; Mus musculus)
MA0014.2 (PAX5; Homo sapiens)
MA0014.3 (PAX5; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.030.092.013.033.029.012.051.017.064.034.014.013.024.037.015.0
0217.025.029.014.045.040.010.052.017.0104.031.023.012.029.034.018.0
0341.08.037.05.047.081.037.033.040.023.029.012.011.017.075.04.0
0461.06.042.030.016.08.08.097.027.014.065.072.05.04.017.028.0
0560.01.046.02.014.02.012.04.061.04.064.03.015.03.0207.02.0
0660.025.053.012.04.01.02.03.064.058.0148.059.01.01.05.04.0
070.040.043.046.01.017.08.059.02.030.0141.035.00.06.055.017.0
080.01.01.01.03.067.02.021.010.0209.02.026.06.0108.02.041.0
0915.00.02.02.0312.010.052.011.00.07.00.00.056.07.020.06.0
1078.064.0196.045.014.01.04.05.036.016.018.04.06.03.07.03.0
116.099.013.016.03.035.01.045.00.0151.012.062.00.036.010.011.0
121.04.03.01.0107.0152.050.012.02.022.012.00.013.046.075.00.0
1312.01.0109.01.0197.05.020.02.061.05.073.01.00.00.012.01.0
14138.08.046.078.04.00.03.04.0144.07.032.031.01.00.02.02.0
151.060.0226.00.02.08.05.00.00.016.066.01.00.021.094.00.0
160.01.01.01.00.084.01.020.02.0315.07.067.00.01.00.00.0
170.00.02.00.0138.010.0246.07.04.00.04.01.02.00.086.00.0
1815.05.016.0108.00.01.01.08.068.09.054.0207.01.00.02.05.0
1917.00.066.01.04.00.010.01.060.02.07.04.027.01.0296.04.0
2076.01.022.09.03.00.00.00.0293.020.049.017.03.01.04.02.0
2159.0303.07.06.07.012.01.02.015.043.04.013.01.022.01.04.0
2226.013.032.011.061.0149.059.0111.03.04.02.04.04.01.09.011.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.346-0.041.072-0.860.054-0.074-0.9380.485-0.5990.7110.083-0.788-0.86-0.260.167-0.721
02-0.599-0.22-0.074-0.7880.3610.244-1.1140.504-0.5991.194-0.008-0.302-0.938-0.0740.083-0.543
030.269-1.3280.167-1.770.4040.9450.1670.0540.244-0.302-0.074-0.938-1.022-0.5990.868-1.975
040.663-1.60.293-0.04-0.658-1.328-1.3281.124-0.144-0.7880.7260.828-1.77-1.975-0.599-0.108
050.646-3.1260.383-2.584-0.788-2.584-0.938-1.9750.663-1.9750.711-2.234-0.721-2.2341.88-2.584
060.646-0.220.523-0.938-1.975-3.126-2.584-2.2340.7110.6131.5450.63-3.126-3.126-1.77-1.975
07-4.40.2440.3160.383-3.126-0.599-1.3280.63-2.584-0.041.4970.112-4.4-1.60.56-0.599
08-4.4-3.126-3.126-3.126-2.2340.756-2.584-0.392-1.1141.89-2.584-0.181-1.61.231-2.5840.269
09-0.721-4.4-2.584-2.5842.29-1.1140.504-1.022-4.4-1.454-4.4-4.40.578-1.454-0.439-1.6
100.9070.7111.8260.361-0.788-3.126-1.975-1.770.14-0.658-0.543-1.975-1.6-2.234-1.454-2.234
11-1.61.145-0.86-0.658-2.2340.112-3.1260.361-4.41.565-0.9380.679-4.40.14-1.114-1.022
12-3.126-1.975-2.234-3.1261.2221.5720.465-0.938-2.584-0.346-0.938-4.4-0.860.3830.868-4.4
13-0.938-3.1261.241-3.1261.831-1.77-0.439-2.5840.663-1.770.841-3.126-4.4-4.4-0.938-3.126
141.476-1.3280.3830.907-1.975-4.4-2.234-1.9751.518-1.4540.023-0.008-3.126-4.4-2.584-2.584
15-3.1260.6461.968-4.4-2.584-1.328-1.77-4.4-4.4-0.6580.741-3.126-4.4-0.3921.093-4.4
16-4.4-3.126-3.126-3.126-4.40.981-3.126-0.439-2.5842.299-1.4540.756-4.4-3.126-4.4-4.4
17-4.4-4.4-2.584-4.41.476-1.1142.053-1.454-1.975-4.4-1.975-3.126-2.584-4.41.004-4.4
18-0.721-1.77-0.6581.231-4.4-3.126-3.126-1.3280.771-1.2150.5421.88-3.126-4.4-2.584-1.77
19-0.599-4.40.741-3.126-1.975-4.4-1.114-3.1260.646-2.584-1.454-1.975-0.144-3.1262.237-1.975
200.881-3.126-0.346-1.215-2.234-4.4-4.4-4.42.227-0.4390.445-0.599-2.234-3.126-1.975-2.584
210.632.261-1.454-1.6-1.454-0.938-3.126-2.584-0.7210.316-1.975-0.86-3.126-0.346-3.126-1.975
22-0.181-0.860.023-1.0220.6631.5520.631.259-2.234-1.975-2.584-1.975-1.975-3.126-1.215-1.022