We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPax5
ModelPAX5_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusnddbYvvvvRRSCRKGRMbn
Best auROC (human)0.947
Best auROC (mouse)0.927
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)8
Aligned words401
TF familyPaired domain only {3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox) {3.2.2.2}
MGIMGI:97489
EntrezGeneGeneID:18507
(SSTAR profile)
UniProt IDPAX5_MOUSE
UniProt ACQ02650
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.561260000000001
0.0005 8.297260000000001
0.0001 11.92416
GTEx tissue expression atlas Pax5 expression
Motifs in JASPAR
MA0014.1 (Pax5; Mus musculus)
MA0014.2 (PAX5; Homo sapiens)
MA0014.3 (PAX5; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0155.03.037.013.024.02.022.011.038.014.068.021.05.03.068.08.0
0248.019.044.011.07.04.05.06.042.033.076.044.07.01.041.04.0
0315.032.041.016.02.018.09.028.017.039.074.036.00.010.043.012.0
043.014.08.09.02.057.010.030.06.0110.021.030.03.067.012.010.0
055.03.03.03.0181.032.024.011.01.044.03.03.015.041.014.09.0
0627.026.0132.017.099.07.013.01.05.017.016.06.017.07.02.00.0
0723.038.078.09.014.031.09.03.03.0112.040.08.00.07.017.00.0
083.011.023.03.019.0114.045.010.022.070.038.014.00.08.011.01.0
0910.04.029.01.0134.022.038.09.033.011.070.03.08.02.018.00.0
1098.08.039.040.029.02.02.06.093.06.040.016.06.01.01.05.0
110.0104.0121.01.00.011.06.00.01.019.061.01.00.021.046.00.0
120.00.00.01.00.0138.00.017.00.0184.06.044.00.00.00.02.0
130.00.00.00.082.05.0226.09.02.00.04.00.05.00.059.00.0
147.02.012.068.00.01.00.04.010.016.056.0207.00.01.01.07.0
153.01.013.00.06.00.014.00.063.01.05.00.025.01.0257.03.0
1666.01.023.07.02.00.01.00.0212.021.044.012.01.00.01.01.0
1734.0240.04.03.010.04.01.07.017.041.01.010.02.011.02.05.0
1813.018.020.012.048.0145.049.054.03.03.00.02.03.04.03.015.0
1925.012.024.06.068.032.024.046.012.028.021.011.013.043.017.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.8-1.9980.407-0.621-0.02-2.35-0.106-0.7830.434-0.5481.011-0.152-1.532-1.9981.011-1.089
020.665-0.250.579-0.783-1.216-1.738-1.532-1.3620.5330.2941.1220.579-1.216-2.8970.509-1.738
03-0.4810.2640.509-0.418-2.35-0.303-0.9760.132-0.3590.4591.0950.38-4.199-0.8750.556-0.698
04-1.998-0.548-1.089-0.976-2.350.836-0.8750.2-1.3621.49-0.1520.2-1.9980.996-0.698-0.875
05-1.532-1.998-1.998-1.9981.9870.264-0.02-0.783-2.8970.579-1.998-1.998-0.4810.509-0.548-0.976
060.0960.0591.672-0.3591.385-1.216-0.621-2.897-1.532-0.359-0.418-1.362-0.359-1.216-2.35-4.199
07-0.0620.4341.148-0.976-0.5480.232-0.976-1.998-1.9981.5080.484-1.089-4.199-1.216-0.359-4.199
08-1.998-0.783-0.062-1.998-0.251.5260.601-0.875-0.1061.040.434-0.548-4.199-1.089-0.783-2.897
09-0.875-1.7380.166-2.8971.687-0.1060.434-0.9760.294-0.7831.04-1.998-1.089-2.35-0.303-4.199
101.375-1.0890.4590.4840.166-2.35-2.35-1.3621.323-1.3620.484-0.418-1.362-2.897-2.897-1.532
11-4.1991.4341.585-2.897-4.199-0.783-1.362-4.199-2.897-0.250.903-2.897-4.199-0.1520.623-4.199
12-4.199-4.199-4.199-2.897-4.1991.716-4.199-0.359-4.1992.003-1.3620.579-4.199-4.199-4.199-2.35
13-4.199-4.199-4.199-4.1991.197-1.5322.208-0.976-2.35-4.199-1.738-4.199-1.532-4.1990.87-4.199
14-1.216-2.35-0.6981.011-4.199-2.897-4.199-1.738-0.875-0.4180.8182.121-4.199-2.897-2.897-1.216
15-1.998-2.897-0.621-4.199-1.362-4.199-0.548-4.1990.935-2.897-1.532-4.1990.02-2.8972.337-1.998
160.982-2.897-0.062-1.216-2.35-4.199-2.897-4.1992.145-0.1520.579-0.698-2.897-4.199-2.897-2.897
170.3232.268-1.738-1.998-0.875-1.738-2.897-1.216-0.3590.509-2.897-0.875-2.35-0.783-2.35-1.532
18-0.621-0.303-0.2-0.6980.6651.7660.6860.782-1.998-1.998-4.199-2.35-1.998-1.738-1.998-0.481
190.02-0.698-0.02-1.3621.0110.264-0.020.623-0.6980.132-0.152-0.783-0.6210.556-0.359-0.875