We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPax5
ModelPAX5_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusvdRnKYRvYvRdGCRdRRM
Best auROC (human)0.944
Best auROC (mouse)0.861
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPaired domain only {3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox) {3.2.2.2}
MGIMGI:97489
EntrezGeneGeneID:18507
(SSTAR profile)
UniProt IDPAX5_MOUSE
UniProt ACQ02650
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.78396
0.0005 4.64071
0.0001 6.42056
GTEx tissue expression atlas Pax5 expression
Motifs in JASPAR
MA0014.1 (Pax5; Mus musculus)
MA0014.2 (PAX5; Homo sapiens)
MA0014.3 (PAX5; Homo sapiens)
PCM
ACGT
01142.0121.0201.036.0
02156.054.0154.0136.0
03173.023.0293.011.0
04150.0101.0175.074.0
052.0114.0243.0141.0
0639.0380.014.067.0
07376.040.064.020.0
0882.0106.0268.044.0
0912.0269.066.0153.0
1086.0240.0155.019.0
11290.018.0183.09.0
12262.026.0114.098.0
132.0138.0356.04.0
147.0409.016.068.0
15137.017.0333.013.0
1662.036.0115.0287.0
17123.013.0351.013.0
18332.016.0109.043.0
19111.0339.030.020.0
PWM
ACGT
010.126-0.0320.47-1.215
020.219-0.8230.2060.083
030.322-1.640.845-2.311
040.18-0.210.333-0.516
05-3.573-0.0910.6590.119
06-1.1381.104-2.096-0.613
071.093-1.114-0.658-1.77
08-0.415-0.1630.756-1.022
09-2.2340.76-0.6280.2
10-0.3680.6460.213-1.818
110.835-1.8680.377-2.484
120.734-1.525-0.091-0.24
13-3.5730.0981.039-3.126
14-2.6941.177-1.975-0.599
150.091-1.920.972-2.163
16-0.689-1.215-0.0820.824
17-0.016-2.1631.025-2.163
180.969-1.975-0.135-1.044
19-0.1170.99-1.389-1.77