Model info
| Transcription factor | Pax5 | ||||||||
| Model | PAX5_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdRnKYRvYvRdGCRdRRM | ||||||||
| Best auROC (human) | 0.944 | ||||||||
| Best auROC (mouse) | 0.861 | ||||||||
| Peak sets in benchmark (human) | 32 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Paired domain only {3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox) {3.2.2.2} | ||||||||
| MGI | MGI:97489 | ||||||||
| EntrezGene | GeneID:18507 (SSTAR profile) | ||||||||
| UniProt ID | PAX5_MOUSE | ||||||||
| UniProt AC | Q02650 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pax5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 142.0 | 121.0 | 201.0 | 36.0 |
| 02 | 156.0 | 54.0 | 154.0 | 136.0 |
| 03 | 173.0 | 23.0 | 293.0 | 11.0 |
| 04 | 150.0 | 101.0 | 175.0 | 74.0 |
| 05 | 2.0 | 114.0 | 243.0 | 141.0 |
| 06 | 39.0 | 380.0 | 14.0 | 67.0 |
| 07 | 376.0 | 40.0 | 64.0 | 20.0 |
| 08 | 82.0 | 106.0 | 268.0 | 44.0 |
| 09 | 12.0 | 269.0 | 66.0 | 153.0 |
| 10 | 86.0 | 240.0 | 155.0 | 19.0 |
| 11 | 290.0 | 18.0 | 183.0 | 9.0 |
| 12 | 262.0 | 26.0 | 114.0 | 98.0 |
| 13 | 2.0 | 138.0 | 356.0 | 4.0 |
| 14 | 7.0 | 409.0 | 16.0 | 68.0 |
| 15 | 137.0 | 17.0 | 333.0 | 13.0 |
| 16 | 62.0 | 36.0 | 115.0 | 287.0 |
| 17 | 123.0 | 13.0 | 351.0 | 13.0 |
| 18 | 332.0 | 16.0 | 109.0 | 43.0 |
| 19 | 111.0 | 339.0 | 30.0 | 20.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.126 | -0.032 | 0.47 | -1.215 |
| 02 | 0.219 | -0.823 | 0.206 | 0.083 |
| 03 | 0.322 | -1.64 | 0.845 | -2.311 |
| 04 | 0.18 | -0.21 | 0.333 | -0.516 |
| 05 | -3.573 | -0.091 | 0.659 | 0.119 |
| 06 | -1.138 | 1.104 | -2.096 | -0.613 |
| 07 | 1.093 | -1.114 | -0.658 | -1.77 |
| 08 | -0.415 | -0.163 | 0.756 | -1.022 |
| 09 | -2.234 | 0.76 | -0.628 | 0.2 |
| 10 | -0.368 | 0.646 | 0.213 | -1.818 |
| 11 | 0.835 | -1.868 | 0.377 | -2.484 |
| 12 | 0.734 | -1.525 | -0.091 | -0.24 |
| 13 | -3.573 | 0.098 | 1.039 | -3.126 |
| 14 | -2.694 | 1.177 | -1.975 | -0.599 |
| 15 | 0.091 | -1.92 | 0.972 | -2.163 |
| 16 | -0.689 | -1.215 | -0.082 | 0.824 |
| 17 | -0.016 | -2.163 | 1.025 | -2.163 |
| 18 | 0.969 | -1.975 | -0.135 | -1.044 |
| 19 | -0.117 | 0.99 | -1.389 | -1.77 |