We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPAX6
(GeneCards)
ModelPAX6_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
C
Motif rank
0
ConsensushKYMYGCWTSRvYKv
Best auROC (human)0.68
Best auROC (mouse)0.791
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)8
Aligned words504
TF familyPaired plus homeo domain {3.2.1}
TF subfamilyPAX-4/6 {3.2.1.2}
HGNCHGNC:8620
EntrezGeneGeneID:5080
(SSTAR profile)
UniProt IDPAX6_HUMAN
UniProt ACP26367
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.886310000000002
0.0005 10.647210000000001
0.0001 14.261960000000002
GTEx tissue expression atlas PAX6 expression
ReMap ChIP-seq dataset list PAX6 datasets
Motifs in JASPAR
MA0069.1 (Pax6; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0110.04.08.034.028.03.08.096.06.05.08.017.023.05.043.0202.0
024.037.00.026.00.09.00.08.03.030.02.032.08.0101.07.0233.0
0311.03.00.01.0144.019.06.08.01.07.00.01.059.0205.012.023.0
044.0147.02.062.027.0141.00.066.01.09.00.08.02.020.02.09.0
056.00.028.00.0127.01.0186.03.00.00.04.00.09.00.0134.02.0
060.0105.033.04.00.01.00.00.03.0298.050.01.00.02.03.00.0
070.03.00.00.0162.058.06.0180.027.015.05.039.01.01.00.03.0
086.05.04.0175.00.07.01.069.00.00.02.09.01.047.02.0172.0
090.05.02.00.01.042.011.05.00.05.04.00.03.0114.0305.03.0
101.00.02.01.0140.07.012.07.0184.016.093.029.04.01.02.01.0
1162.0124.0111.032.05.014.02.03.011.044.030.024.01.026.08.03.0
123.014.02.060.012.018.08.0170.04.030.06.0111.01.07.03.051.0
132.01.015.02.012.00.047.010.09.00.04.06.026.06.0307.053.0
1414.021.012.02.02.02.00.03.0167.0115.066.025.016.030.020.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.114-1.975-1.3280.083-0.108-2.234-1.3281.114-1.6-1.77-1.328-0.599-0.302-1.770.3161.856
02-1.9750.167-4.4-0.181-4.4-1.215-4.4-1.328-2.234-0.04-2.5840.023-1.3281.165-1.4541.998
03-1.022-2.234-4.4-3.1261.518-0.49-1.6-1.328-3.126-1.454-4.4-3.1260.631.871-0.938-0.302
04-1.9751.539-2.5840.679-0.1441.497-4.40.741-3.126-1.215-4.4-1.328-2.584-0.439-2.584-1.215
05-1.6-4.4-0.108-4.41.393-3.1261.773-2.234-4.4-4.4-1.975-4.4-1.215-4.41.446-2.584
06-4.41.2030.054-1.975-4.4-3.126-4.4-4.4-2.2342.2440.465-3.126-4.4-2.584-2.234-4.4
07-4.4-2.234-4.4-4.41.6360.613-1.61.741-0.144-0.721-1.770.219-3.126-3.126-4.4-2.234
08-1.6-1.77-1.9751.713-4.4-1.454-3.1260.785-4.4-4.4-2.584-1.215-3.1260.404-2.5841.695
09-4.4-1.77-2.584-4.4-3.1260.293-1.022-1.77-4.4-1.77-1.975-4.4-2.2341.2852.267-2.234
10-3.126-4.4-2.584-3.1261.49-1.454-0.938-1.4541.763-0.6581.082-0.074-1.975-3.126-2.584-3.126
110.6791.3691.2590.023-1.77-0.788-2.584-2.234-1.0220.339-0.04-0.26-3.126-0.181-1.328-2.234
12-2.234-0.788-2.5840.646-0.938-0.543-1.3281.684-1.975-0.04-1.61.259-3.126-1.454-2.2340.485
13-2.584-3.126-0.721-2.584-0.938-4.40.404-1.114-1.215-4.4-1.975-1.6-0.181-1.62.2740.523
14-0.788-0.392-0.938-2.584-2.584-2.584-4.4-2.2341.6661.2940.741-0.22-0.658-0.04-0.439-1.77