We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPAX6
(GeneCards)
ModelPAX6_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusWYMYRCWTSRnT
Best auROC (human)0.749
Best auROC (mouse)0.734
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPaired plus homeo domain {3.2.1}
TF subfamilyPAX-4/6 {3.2.1.2}
HGNCHGNC:8620
EntrezGeneGeneID:5080
(SSTAR profile)
UniProt IDPAX6_HUMAN
UniProt ACP26367
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.13416
0.0005 5.89856
0.0001 7.433935
GTEx tissue expression atlas PAX6 expression
ReMap ChIP-seq dataset list PAX6 datasets
Motifs in JASPAR
MA0069.1 (Pax6; Homo sapiens)
PCM
ACGT
0162.016.037.0385.0
0211.0171.019.0299.0
03208.0234.025.033.0
0422.0283.020.0175.0
05143.035.0303.019.0
065.0402.083.010.0
07129.068.09.0294.0
0814.038.09.0439.0
097.0204.0284.05.0
10355.08.0118.019.0
1173.0179.0144.0104.0
1233.047.016.0404.0
PWM
ACGT
01-0.689-1.975-1.1891.117
02-2.3110.31-1.8180.865
030.5040.621-1.561-1.298
04-1.6810.81-1.770.333
050.133-1.2420.878-1.818
06-2.9611.16-0.403-2.394
070.031-0.599-2.4840.848
08-2.096-1.163-2.4841.247
09-2.6940.4850.814-2.961
101.036-2.584-0.057-1.818
11-0.5290.3550.14-0.181
12-1.298-0.958-1.9751.165