We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPax6
ModelPAX6_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
B
Motif rank
0
ConsensushKYvYRChTSRnYRv
Best auROC (human)0.606
Best auROC (mouse)0.8
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPaired plus homeo domain {3.2.1}
TF subfamilyPAX-4/6 {3.2.1.2}
MGIMGI:97490
EntrezGeneGeneID:18508
(SSTAR profile)
UniProt IDPAX6_MOUSE
UniProt ACP63015
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.319510000000001
0.0005 11.01511
0.0001 14.50436
GTEx tissue expression atlas Pax6 expression
Motifs in JASPAR
MA0069.1 (Pax6; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.01.011.046.015.09.04.092.04.015.05.032.013.08.027.0214.0
022.020.00.014.03.017.00.013.04.025.02.016.09.0115.06.0254.0
0313.02.02.01.0131.023.08.015.01.06.00.01.049.0202.028.018.0
040.0109.05.080.018.0151.00.064.02.016.01.019.00.022.01.012.0
050.02.018.00.0131.05.0157.05.01.01.05.00.011.02.0162.00.0
062.096.041.04.00.09.00.01.02.0269.069.02.00.04.00.01.0
074.00.00.00.0122.056.013.0187.020.022.02.066.00.03.01.04.0
082.08.00.0136.04.08.03.066.00.02.01.013.04.044.07.0202.0
090.04.05.01.00.047.08.07.00.07.04.00.06.0154.0244.013.0
104.00.02.00.0167.014.017.014.0182.07.067.05.014.03.04.00.0
1181.0113.0109.064.02.017.03.02.09.044.020.017.01.011.05.02.0
128.019.02.064.013.013.03.0156.07.022.05.0103.01.07.05.072.0
139.01.015.04.016.00.038.07.05.00.09.01.048.05.0301.041.0
1422.022.028.06.00.02.01.03.0149.0128.077.09.016.018.015.04.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.975-3.126-1.0220.383-0.721-1.215-1.9751.072-1.975-0.721-1.770.023-0.86-1.328-0.1441.913
02-2.584-0.439-4.4-0.788-2.234-0.599-4.4-0.86-1.975-0.22-2.584-0.658-1.2151.294-1.62.084
03-0.86-2.584-2.584-3.1261.424-0.302-1.328-0.721-3.126-1.6-4.4-3.1260.4451.856-0.108-0.543
04-4.41.241-1.770.932-0.5431.565-4.40.711-2.584-0.658-3.126-0.49-4.4-0.346-3.126-0.938
05-4.4-2.584-0.543-4.41.424-1.771.604-1.77-3.126-3.126-1.77-4.4-1.022-2.5841.636-4.4
06-2.5841.1140.269-1.975-4.4-1.215-4.4-3.126-2.5842.1420.785-2.584-4.4-1.975-4.4-3.126
07-1.975-4.4-4.4-4.41.3530.578-0.861.779-0.439-0.346-2.5840.741-4.4-2.234-3.126-1.975
08-2.584-1.328-4.41.461-1.975-1.328-2.2340.741-4.4-2.584-3.126-0.86-1.9750.339-1.4541.856
09-4.4-1.975-1.77-3.126-4.40.404-1.328-1.454-4.4-1.454-1.975-4.4-1.61.5852.044-0.86
10-1.975-4.4-2.584-4.41.666-0.788-0.599-0.7881.752-1.4540.756-1.77-0.788-2.234-1.975-4.4
110.9451.2761.2410.711-2.584-0.599-2.234-2.584-1.2150.339-0.439-0.599-3.126-1.022-1.77-2.584
12-1.328-0.49-2.5840.711-0.86-0.86-2.2341.598-1.454-0.346-1.771.184-3.126-1.454-1.770.828
13-1.215-3.126-0.721-1.975-0.658-4.40.193-1.454-1.77-4.4-1.215-3.1260.425-1.772.2540.269
14-0.346-0.346-0.108-1.6-4.4-2.584-3.126-2.2341.5521.4010.894-1.215-0.658-0.543-0.721-1.975