Model info
| Transcription factor | PAX7 (GeneCards) | ||||||||
| Model | PAX7_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TAATYGATTAd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 17615 | ||||||||
| TF family | Paired plus homeo domain {3.2.1} | ||||||||
| TF subfamily | PAX-3/7 {3.2.1.1} | ||||||||
| HGNC | HGNC:8621 | ||||||||
| EntrezGene | GeneID:5081 (SSTAR profile) | ||||||||
| UniProt ID | PAX7_HUMAN | ||||||||
| UniProt AC | P23759 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PAX7 expression | ||||||||
| ReMap ChIP-seq dataset list | PAX7 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2308.584 | 459.655 | 487.512 | 11889.531 |
| 02 | 15055.201 | 17.579 | 37.492 | 35.01 |
| 03 | 14528.991 | 19.285 | 18.044 | 578.962 |
| 04 | 37.957 | 42.27 | 46.612 | 15018.443 |
| 05 | 99.942 | 6233.808 | 155.339 | 8656.193 |
| 06 | 161.981 | 19.293 | 14955.913 | 8.095 |
| 07 | 15052.261 | 20.844 | 63.151 | 9.026 |
| 08 | 65.402 | 15.09 | 12.578 | 15052.213 |
| 09 | 30.948 | 35.941 | 19.13 | 15059.263 |
| 10 | 12997.195 | 489.861 | 519.14 | 1139.086 |
| 11 | 4950.417 | 2033.242 | 2229.964 | 5931.659 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.494 | -2.104 | -2.046 | 1.144 |
| 02 | 1.38 | -5.245 | -4.553 | -4.618 |
| 03 | 1.344 | -5.163 | -5.222 | -1.874 |
| 04 | -4.542 | -4.44 | -4.348 | 1.377 |
| 05 | -3.611 | 0.498 | -3.179 | 0.827 |
| 06 | -3.138 | -5.163 | 1.373 | -5.888 |
| 07 | 1.38 | -5.093 | -4.057 | -5.803 |
| 08 | -4.023 | -5.378 | -5.533 | 1.38 |
| 09 | -4.733 | -4.593 | -5.17 | 1.38 |
| 10 | 1.233 | -2.041 | -1.983 | -1.2 |
| 11 | 0.268 | -0.621 | -0.529 | 0.449 |