We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPAX8
(GeneCards)
ModelPAX8_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
0
ConsensusbYvAYYSRvSYRKd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words37
TF familyPaired domain only {3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox) {3.2.2.2}
HGNCHGNC:8622
EntrezGeneGeneID:7849
(SSTAR profile)
UniProt IDPAX8_HUMAN
UniProt ACQ06710
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.72021
0.0005 5.27096
0.0001 6.384259999999999
GTEx tissue expression atlas PAX8 expression
ReMap ChIP-seq dataset list PAX8 datasets
Motifs in JASPAR
PCM
ACGT
014.2927.82714.67310.128
023.038.2483.53522.107
039.0914.02711.7832.02
0430.7482.5812.021.571
055.0516.6080.015.262
062.5255.8921.57126.933
073.14216.1616.6081.01
0817.172.13214.4763.142
0915.82312.124.9384.04
101.018.30425.0812.525
115.27419.5260.012.12
1214.3644.0418.5160.0
130.03.59116.83316.496
1412.7092.04816.0756.088
PWM
ACGT
01-0.668-0.1490.430.085
02-0.947-0.102-0.8260.82
03-0.0140.3880.225-1.243
041.139-1.068-1.243-1.41
05-0.5320.547-2.4190.467
06-1.084-0.4-1.411.011
07-0.9180.5210.547-1.667
080.579-1.2060.417-0.918
090.5010.251-0.551-0.718
10-1.667-0.0960.942-1.084
11-0.4950.701-2.4190.251
120.41-0.7180.65-2.419
13-2.419-0.8130.560.541
140.295-1.2340.516-0.371