We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPBX1
(GeneCards)
ModelPBX1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnWGAbWGRCARv
Best auROC (human)0.94
Best auROC (mouse)0.873
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words527
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPBX {3.1.4.4}
HGNCHGNC:8632
EntrezGeneGeneID:5087
(SSTAR profile)
UniProt IDPBX1_HUMAN
UniProt ACP40424
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.90378
0.0005 10.808385000000001
0.0001 14.80593
GTEx tissue expression atlas PBX1 expression
ReMap ChIP-seq dataset list PBX1 datasets
Motifs in JASPAR
MA0070.1 (PBX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0110.06.08.048.030.04.017.0125.020.012.012.090.09.08.012.089.0
024.02.061.02.01.02.027.00.02.00.047.00.014.05.0321.012.0
0316.01.01.03.06.01.00.02.0440.02.07.07.012.00.01.01.0
0419.0118.0168.0169.00.00.03.01.02.02.01.04.00.00.07.06.0
057.00.01.013.024.02.017.077.04.013.06.0156.06.05.014.0155.0
062.00.039.00.02.00.018.00.01.01.036.00.02.02.0378.019.0
074.00.03.00.03.00.00.00.0328.01.0133.09.09.00.03.07.0
082.0318.02.022.00.01.00.00.00.0132.01.06.00.016.00.00.0
092.00.00.00.0370.02.072.023.02.00.00.01.08.00.018.02.0
1052.018.0282.030.02.00.00.00.06.04.074.06.08.03.012.03.0
1119.09.032.08.06.07.06.06.062.0138.0127.041.04.012.017.06.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.114-1.6-1.3280.425-0.04-1.975-0.5991.377-0.439-0.938-0.9381.05-1.215-1.328-0.9381.039
02-1.975-2.5840.663-2.584-3.126-2.584-0.144-4.4-2.584-4.40.404-4.4-0.788-1.772.318-0.938
03-0.658-3.126-3.126-2.234-1.6-3.126-4.4-2.5842.633-2.584-1.454-1.454-0.938-4.4-3.126-3.126
04-0.491.321.6721.678-4.4-4.4-2.234-3.126-2.584-2.584-3.126-1.975-4.4-4.4-1.454-1.6
05-1.454-4.4-3.126-0.86-0.26-2.584-0.5990.894-1.975-0.86-1.61.598-1.6-1.77-0.7881.592
06-2.584-4.40.219-4.4-2.584-4.4-0.543-4.4-3.126-3.1260.14-4.4-2.584-2.5842.482-0.49
07-1.975-4.4-2.234-4.4-2.234-4.4-4.4-4.42.34-3.1261.439-1.215-1.215-4.4-2.234-1.454
08-2.5842.309-2.584-0.346-4.4-3.126-4.4-4.4-4.41.431-3.126-1.6-4.4-0.658-4.4-4.4
09-2.584-4.4-4.4-4.42.46-2.5840.828-0.302-2.584-4.4-4.4-3.126-1.328-4.4-0.543-2.584
100.504-0.5432.189-0.04-2.584-4.4-4.4-4.4-1.6-1.9750.855-1.6-1.328-2.234-0.938-2.234
11-0.49-1.2150.023-1.328-1.6-1.454-1.6-1.60.6791.4761.3930.269-1.975-0.938-0.599-1.6