Transcription factor | PBX1 (GeneCards) | ||||||||
Model | PBX1_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nWGAbWGRCARv | ||||||||
Best auROC (human) | 0.94 | ||||||||
Best auROC (mouse) | 0.873 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 36 | ||||||||
Aligned words | 527 | ||||||||
TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
TF subfamily | PBX {3.1.4.4} | ||||||||
HGNC | HGNC:8632 | ||||||||
EntrezGene | GeneID:5087 (SSTAR profile) | ||||||||
UniProt ID | PBX1_HUMAN | ||||||||
UniProt AC | P40424 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | PBX1 expression | ||||||||
ReMap ChIP-seq dataset list | PBX1 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 10.0 | 6.0 | 8.0 | 48.0 | 30.0 | 4.0 | 17.0 | 125.0 | 20.0 | 12.0 | 12.0 | 90.0 | 9.0 | 8.0 | 12.0 | 89.0 |
02 | 4.0 | 2.0 | 61.0 | 2.0 | 1.0 | 2.0 | 27.0 | 0.0 | 2.0 | 0.0 | 47.0 | 0.0 | 14.0 | 5.0 | 321.0 | 12.0 |
03 | 16.0 | 1.0 | 1.0 | 3.0 | 6.0 | 1.0 | 0.0 | 2.0 | 440.0 | 2.0 | 7.0 | 7.0 | 12.0 | 0.0 | 1.0 | 1.0 |
04 | 19.0 | 118.0 | 168.0 | 169.0 | 0.0 | 0.0 | 3.0 | 1.0 | 2.0 | 2.0 | 1.0 | 4.0 | 0.0 | 0.0 | 7.0 | 6.0 |
05 | 7.0 | 0.0 | 1.0 | 13.0 | 24.0 | 2.0 | 17.0 | 77.0 | 4.0 | 13.0 | 6.0 | 156.0 | 6.0 | 5.0 | 14.0 | 155.0 |
06 | 2.0 | 0.0 | 39.0 | 0.0 | 2.0 | 0.0 | 18.0 | 0.0 | 1.0 | 1.0 | 36.0 | 0.0 | 2.0 | 2.0 | 378.0 | 19.0 |
07 | 4.0 | 0.0 | 3.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 328.0 | 1.0 | 133.0 | 9.0 | 9.0 | 0.0 | 3.0 | 7.0 |
08 | 2.0 | 318.0 | 2.0 | 22.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 132.0 | 1.0 | 6.0 | 0.0 | 16.0 | 0.0 | 0.0 |
09 | 2.0 | 0.0 | 0.0 | 0.0 | 370.0 | 2.0 | 72.0 | 23.0 | 2.0 | 0.0 | 0.0 | 1.0 | 8.0 | 0.0 | 18.0 | 2.0 |
10 | 52.0 | 18.0 | 282.0 | 30.0 | 2.0 | 0.0 | 0.0 | 0.0 | 6.0 | 4.0 | 74.0 | 6.0 | 8.0 | 3.0 | 12.0 | 3.0 |
11 | 19.0 | 9.0 | 32.0 | 8.0 | 6.0 | 7.0 | 6.0 | 6.0 | 62.0 | 138.0 | 127.0 | 41.0 | 4.0 | 12.0 | 17.0 | 6.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -1.114 | -1.6 | -1.328 | 0.425 | -0.04 | -1.975 | -0.599 | 1.377 | -0.439 | -0.938 | -0.938 | 1.05 | -1.215 | -1.328 | -0.938 | 1.039 |
02 | -1.975 | -2.584 | 0.663 | -2.584 | -3.126 | -2.584 | -0.144 | -4.4 | -2.584 | -4.4 | 0.404 | -4.4 | -0.788 | -1.77 | 2.318 | -0.938 |
03 | -0.658 | -3.126 | -3.126 | -2.234 | -1.6 | -3.126 | -4.4 | -2.584 | 2.633 | -2.584 | -1.454 | -1.454 | -0.938 | -4.4 | -3.126 | -3.126 |
04 | -0.49 | 1.32 | 1.672 | 1.678 | -4.4 | -4.4 | -2.234 | -3.126 | -2.584 | -2.584 | -3.126 | -1.975 | -4.4 | -4.4 | -1.454 | -1.6 |
05 | -1.454 | -4.4 | -3.126 | -0.86 | -0.26 | -2.584 | -0.599 | 0.894 | -1.975 | -0.86 | -1.6 | 1.598 | -1.6 | -1.77 | -0.788 | 1.592 |
06 | -2.584 | -4.4 | 0.219 | -4.4 | -2.584 | -4.4 | -0.543 | -4.4 | -3.126 | -3.126 | 0.14 | -4.4 | -2.584 | -2.584 | 2.482 | -0.49 |
07 | -1.975 | -4.4 | -2.234 | -4.4 | -2.234 | -4.4 | -4.4 | -4.4 | 2.34 | -3.126 | 1.439 | -1.215 | -1.215 | -4.4 | -2.234 | -1.454 |
08 | -2.584 | 2.309 | -2.584 | -0.346 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | 1.431 | -3.126 | -1.6 | -4.4 | -0.658 | -4.4 | -4.4 |
09 | -2.584 | -4.4 | -4.4 | -4.4 | 2.46 | -2.584 | 0.828 | -0.302 | -2.584 | -4.4 | -4.4 | -3.126 | -1.328 | -4.4 | -0.543 | -2.584 |
10 | 0.504 | -0.543 | 2.189 | -0.04 | -2.584 | -4.4 | -4.4 | -4.4 | -1.6 | -1.975 | 0.855 | -1.6 | -1.328 | -2.234 | -0.938 | -2.234 |
11 | -0.49 | -1.215 | 0.023 | -1.328 | -1.6 | -1.454 | -1.6 | -1.6 | 0.679 | 1.476 | 1.393 | 0.269 | -1.975 | -0.938 | -0.599 | -1.6 |