Model info
| Transcription factor | PBX1 (GeneCards) | ||||||||
| Model | PBX1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dGAbKGACRR | ||||||||
| Best auROC (human) | 0.936 | ||||||||
| Best auROC (mouse) | 0.883 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 36 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PBX {3.1.4.4} | ||||||||
| HGNC | HGNC:8632 | ||||||||
| EntrezGene | GeneID:5087 (SSTAR profile) | ||||||||
| UniProt ID | PBX1_HUMAN | ||||||||
| UniProt AC | P40424 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PBX1 expression | ||||||||
| ReMap ChIP-seq dataset list | PBX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 105.0 | 44.0 | 101.0 | 250.0 |
| 02 | 32.0 | 45.0 | 417.0 | 6.0 |
| 03 | 434.0 | 27.0 | 12.0 | 27.0 |
| 04 | 21.0 | 133.0 | 170.0 | 176.0 |
| 05 | 36.0 | 38.0 | 86.0 | 340.0 |
| 06 | 19.0 | 6.0 | 472.0 | 3.0 |
| 07 | 342.0 | 1.0 | 153.0 | 4.0 |
| 08 | 18.0 | 429.0 | 11.0 | 42.0 |
| 09 | 342.0 | 11.0 | 114.0 | 33.0 |
| 10 | 54.0 | 51.0 | 343.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.172 | -1.022 | -0.21 | 0.687 |
| 02 | -1.328 | -1.0 | 1.196 | -2.819 |
| 03 | 1.236 | -1.489 | -2.234 | -1.489 |
| 04 | -1.725 | 0.061 | 0.304 | 0.339 |
| 05 | -1.215 | -1.163 | -0.368 | 0.993 |
| 06 | -1.818 | -2.819 | 1.32 | -3.325 |
| 07 | 0.999 | -3.903 | 0.2 | -3.126 |
| 08 | -1.868 | 1.224 | -2.311 | -1.067 |
| 09 | 0.999 | -2.311 | -0.091 | -1.298 |
| 10 | -0.823 | -0.879 | 1.002 | -0.86 |