We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPBX1
(GeneCards)
ModelPBX1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdGAbKGACRR
Best auROC (human)0.936
Best auROC (mouse)0.883
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words501
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPBX {3.1.4.4}
HGNCHGNC:8632
EntrezGeneGeneID:5087
(SSTAR profile)
UniProt IDPBX1_HUMAN
UniProt ACP40424
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9351199999999995
0.0005 5.72058
0.0001 7.26249
GTEx tissue expression atlas PBX1 expression
ReMap ChIP-seq dataset list PBX1 datasets
Motifs in JASPAR
PCM
ACGT
01105.044.0101.0250.0
0232.045.0417.06.0
03434.027.012.027.0
0421.0133.0170.0176.0
0536.038.086.0340.0
0619.06.0472.03.0
07342.01.0153.04.0
0818.0429.011.042.0
09342.011.0114.033.0
1054.051.0343.052.0
PWM
ACGT
01-0.172-1.022-0.210.687
02-1.328-1.01.196-2.819
031.236-1.489-2.234-1.489
04-1.7250.0610.3040.339
05-1.215-1.163-0.3680.993
06-1.818-2.8191.32-3.325
070.999-3.9030.2-3.126
08-1.8681.224-2.311-1.067
090.999-2.311-0.091-1.298
10-0.823-0.8791.002-0.86