We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPbx1
ModelPBX1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnWGAYKGRYRRv
Best auROC (human)0.851
Best auROC (mouse)0.915
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words508
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPBX {3.1.4.4}
MGIMGI:97495
EntrezGeneGeneID:18514
(SSTAR profile)
UniProt IDPBX1_MOUSE
UniProt ACP41778
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.817875
0.0005 11.70902
0.0001 15.264710000000001
GTEx tissue expression atlas Pbx1 expression
Motifs in JASPAR
MA0070.1 (PBX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.03.07.0105.013.06.010.094.014.013.09.095.011.01.012.083.0
020.02.060.00.00.00.023.00.00.01.037.00.03.02.0369.03.0
033.00.00.00.05.00.00.00.0486.01.00.02.03.00.00.00.0
0412.0122.074.0289.00.01.00.00.00.00.00.00.00.01.00.01.0
051.00.00.011.023.04.026.071.01.00.02.071.012.03.041.0234.0
060.00.031.06.00.00.05.02.04.00.060.05.08.04.0279.096.0
079.00.02.01.04.00.00.00.0251.02.0120.02.093.03.02.011.0
086.0199.01.0151.00.04.00.01.00.0113.00.011.00.014.00.00.0
095.00.00.01.0232.06.056.036.01.00.00.00.018.04.0108.033.0
1022.08.0210.016.06.00.03.01.024.014.097.029.016.03.041.010.0
1112.017.034.05.04.06.010.05.057.0132.0108.054.014.013.019.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.26-2.234-1.4541.203-0.86-1.6-1.1141.093-0.788-0.86-1.2151.104-1.022-3.126-0.9380.969
02-4.4-2.5840.646-4.4-4.4-4.4-0.302-4.4-4.4-3.1260.167-4.4-2.234-2.5842.457-2.234
03-2.234-4.4-4.4-4.4-1.77-4.4-4.4-4.42.733-3.126-4.4-2.584-2.234-4.4-4.4-4.4
04-0.9381.3530.8552.213-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-3.126
05-3.126-4.4-4.4-1.022-0.302-1.975-0.1810.814-3.126-4.4-2.5840.814-0.938-2.2340.2692.003
06-4.4-4.4-0.008-1.6-4.4-4.4-1.77-2.584-1.975-4.40.646-1.77-1.328-1.9752.1781.114
07-1.215-4.4-2.584-3.126-1.975-4.4-4.4-4.42.073-2.5841.336-2.5841.082-2.234-2.584-1.022
08-1.61.841-3.1261.565-4.4-1.975-4.4-3.126-4.41.276-4.4-1.022-4.4-0.788-4.4-4.4
09-1.77-4.4-4.4-3.1261.994-1.60.5780.14-3.126-4.4-4.4-4.4-0.543-1.9751.2310.054
10-0.346-1.3281.895-0.658-1.6-4.4-2.234-3.126-0.26-0.7881.124-0.074-0.658-2.2340.269-1.114
11-0.938-0.5990.083-1.77-1.975-1.6-1.114-1.770.5951.4311.2310.542-0.788-0.86-0.49-1.114