Transcription factor | Pbx1 | ||||||||
Model | PBX1_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | WGAKTGRCRKv | ||||||||
Best auROC (human) | 0.858 | ||||||||
Best auROC (mouse) | 0.902 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 36 | ||||||||
Aligned words | 500 | ||||||||
TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
TF subfamily | PBX {3.1.4.4} | ||||||||
MGI | MGI:97495 | ||||||||
EntrezGene | GeneID:18514 (SSTAR profile) | ||||||||
UniProt ID | PBX1_MOUSE | ||||||||
UniProt AC | P41778 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Pbx1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 53.0 | 22.0 | 37.0 | 388.0 |
02 | 6.0 | 12.0 | 479.0 | 3.0 |
03 | 484.0 | 2.0 | 6.0 | 8.0 |
04 | 10.0 | 98.0 | 140.0 | 252.0 |
05 | 21.0 | 11.0 | 50.0 | 418.0 |
06 | 9.0 | 1.0 | 471.0 | 19.0 |
07 | 339.0 | 4.0 | 153.0 | 4.0 |
08 | 2.0 | 445.0 | 5.0 | 48.0 |
09 | 322.0 | 8.0 | 111.0 | 59.0 |
10 | 38.0 | 33.0 | 385.0 | 44.0 |
11 | 73.0 | 170.0 | 218.0 | 39.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.841 | -1.681 | -1.189 | 1.124 |
02 | -2.819 | -2.234 | 1.334 | -3.325 |
03 | 1.345 | -3.573 | -2.819 | -2.584 |
04 | -2.394 | -0.24 | 0.112 | 0.695 |
05 | -1.725 | -2.311 | -0.898 | 1.199 |
06 | -2.484 | -3.903 | 1.317 | -1.818 |
07 | 0.99 | -3.126 | 0.2 | -3.126 |
08 | -3.573 | 1.261 | -2.961 | -0.938 |
09 | 0.939 | -2.584 | -0.117 | -0.737 |
10 | -1.163 | -1.298 | 1.117 | -1.022 |
11 | -0.529 | 0.304 | 0.551 | -1.138 |