Transcription factor | Pbx1 | ||||||||
Model | PBX1_MOUSE.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | bbbYSATTGGYhd | ||||||||
Best auROC (human) | 0.876 | ||||||||
Best auROC (mouse) | 0.915 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 36 | ||||||||
Aligned words | 500 | ||||||||
TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
TF subfamily | PBX {3.1.4.4} | ||||||||
MGI | MGI:97495 | ||||||||
EntrezGene | GeneID:18514 (SSTAR profile) | ||||||||
UniProt ID | PBX1_MOUSE | ||||||||
UniProt AC | P41778 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Pbx1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 59.0 | 215.0 | 66.0 | 160.0 |
02 | 37.0 | 88.0 | 118.0 | 257.0 |
03 | 53.0 | 216.0 | 114.0 | 117.0 |
04 | 12.0 | 93.0 | 29.0 | 366.0 |
05 | 14.0 | 115.0 | 330.0 | 41.0 |
06 | 481.0 | 12.0 | 3.0 | 4.0 |
07 | 6.0 | 30.0 | 17.0 | 447.0 |
08 | 4.0 | 0.0 | 3.0 | 493.0 |
09 | 6.0 | 0.0 | 455.0 | 39.0 |
10 | 129.0 | 4.0 | 360.0 | 7.0 |
11 | 45.0 | 304.0 | 14.0 | 137.0 |
12 | 96.0 | 118.0 | 53.0 | 233.0 |
13 | 165.0 | 54.0 | 224.0 | 57.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.737 | 0.537 | -0.628 | 0.244 |
02 | -1.189 | -0.346 | -0.057 | 0.714 |
03 | -0.841 | 0.542 | -0.091 | -0.065 |
04 | -2.234 | -0.291 | -1.421 | 1.066 |
05 | -2.096 | -0.082 | 0.963 | -1.09 |
06 | 1.338 | -2.234 | -3.325 | -3.126 |
07 | -2.819 | -1.389 | -1.92 | 1.265 |
08 | -3.126 | -4.4 | -3.325 | 1.363 |
09 | -2.819 | -4.4 | 1.283 | -1.138 |
10 | 0.031 | -3.126 | 1.05 | -2.694 |
11 | -1.0 | 0.881 | -2.096 | 0.091 |
12 | -0.26 | -0.057 | -0.841 | 0.617 |
13 | 0.275 | -0.823 | 0.578 | -0.771 |